Back to the "Multiple platform build/check report" | [A] B C D E F G H I J K L M N O P Q R S T U V W X Y Z |
Package 24/389 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
annotate 1.26.1 Biocore Team c/o BioC user list
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |||||
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK | |||||
gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK | |||||
pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
Package: annotate |
Version: 1.26.1 |
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings annotate_1.26.1.tar.gz |
StartedAt: 2010-10-04 15:51:49 -0700 (Mon, 04 Oct 2010) |
EndedAt: 2010-10-04 15:54:32 -0700 (Mon, 04 Oct 2010) |
EllapsedTime: 162.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: annotate.Rcheck |
Warnings: 0 |
* checking for working pdflatex ... OK * using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/annotate.Rcheck' * using R version 2.11.1 (2010-05-31) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'annotate/DESCRIPTION' ... OK * this is package 'annotate' version '1.26.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'annotate' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... SKIPPED * checking PDF version of manual ... OK
annotate.Rcheck/00install.out:
* install options are ' --no-html' * installing *source* package 'annotate' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (annotate)
annotate.Rcheck/annotate-Ex.timings:
name | user | system | elapsed | |
ACCNUMStats | 2.472 | 0.036 | 2.508 | |
GO2heatmap | 0.216 | 0.004 | 0.221 | |
GOmnplot | 0.104 | 0.012 | 0.119 | |
HTMLPage-class | 0 | 0 | 0 | |
LL2homology | 0.004 | 0.000 | 0.003 | |
PMIDAmat | 0.280 | 0.008 | 0.333 | |
PWAmat | 5.388 | 0.072 | 5.460 | |
UniGeneQuery | 0.004 | 0.000 | 0.002 | |
accessionToUID | 0.472 | 0.024 | 4.463 | |
annPkgName | 0 | 0 | 0 | |
aqListGOIDs | 0.528 | 0.048 | 0.587 | |
buildChromLocation | 1.252 | 0.040 | 1.294 | |
buildPubMedAbst | 0.112 | 0.004 | 4.873 | |
chrCats | 5.217 | 0.032 | 5.252 | |
chromLocation-class | 1.208 | 0.008 | 1.217 | |
compatibleVersions | 0.124 | 0.004 | 0.136 | |
dropECode | 0.104 | 0.000 | 0.101 | |
entrezGeneByID | 0.004 | 0.000 | 0.000 | |
entrezGeneQuery | 0.000 | 0.000 | 0.001 | |
filterGOByOntology | 0.004 | 0.000 | 0.003 | |
findNeighbors | 0.000 | 0.000 | 0.002 | |
genbank | 0.068 | 0.004 | 0.864 | |
genelocator | 0 | 0 | 0 | |
getAnnMap | 0.148 | 0.004 | 0.262 | |
getEvidence | 0.088 | 0.008 | 0.095 | |
getGOTerm | 0.108 | 0.004 | 0.111 | |
getOntology | 0.092 | 0.004 | 0.096 | |
getPMInfo | 0.972 | 0.004 | 1.520 | |
getSYMBOL | 0.256 | 0.020 | 0.398 | |
getSeq4Acc | 0.000 | 0.000 | 0.411 | |
hasGOannote | 0.056 | 0.004 | 0.057 | |
hgByChroms | 0.012 | 0.000 | 0.010 | |
hgCLengths | 0.000 | 0.000 | 0.001 | |
hgu95Achroloc | 0.052 | 0.004 | 0.056 | |
hgu95Achrom | 0.048 | 0.000 | 0.048 | |
hgu95All | 0.052 | 0.000 | 0.052 | |
hgu95Asym | 0.052 | 0.000 | 0.053 | |
homoData-class | 0.004 | 0.000 | 0.003 | |
htmlpage | 0.048 | 0.000 | 0.046 | |
isValidkey | 0.000 | 0.000 | 0.001 | |
makeAnchor | 0.000 | 0.000 | 0.001 | |
neighborGeneFinder | 0.000 | 0.000 | 0.001 | |
organism | 1.248 | 0.000 | 1.249 | |
p2LL | 0 | 0 | 0 | |
pm.abstGrep | 18.521 | 0.080 | 19.947 | |
pm.getabst | 19.681 | 0.056 | 21.289 | |
pm.titles | 19.842 | 0.080 | 21.475 | |
pmAbst2HTML | 0.192 | 0.000 | 0.744 | |
pmid2MIAME | 0.000 | 0.000 | 0.001 | |
pmidQuery | 0.000 | 0.000 | 0.001 | |
probesByLL | 2.300 | 0.008 | 2.307 | |
pubMedAbst-class | 0.132 | 0.004 | 0.732 | |
pubmed | 0.060 | 0.000 | 0.674 | |
readGEOAnn | 0 | 0 | 0 | |
serializeEnv | 0.000 | 0.004 | 0.003 | |
setRepository | 0.000 | 0.000 | 0.005 | |
updateSymbolsToValidKeys | 0 | 0 | 0 | |
usedChromGenes | 0.120 | 0.000 | 0.116 | |