Rdisop 1.8.0
Steffen Neumann
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/Rdisop | | Last Changed Rev: 46401 / Revision: 49923 | | Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.8) / i386 | N O T S U P P O R T E D |
* installing *source* package 'Rdisop' ...
Building libRcpp.a in RcppSrc...
R: not found
R: not found
R: not found
c Rcpp.cpp -o Rcpp.o -I"/include" -I"/src/include" -Wall -O2
c: not found
make: [Rcpp.o] Error 127 (ignored)
ar r libRcpp.a Rcpp.o
C:\Rtools211\MinGW\bin\ar.exe: Rcpp.o: No such file or directory
make: *** [libRcpp.a] Error 1
Building imslib.dll in src/imslib...
cp src/winlibs/libims*.dll R_PACKAGE_DIR:E:/biocbld/bbs-2.6-bioc/meat/Rdisop.buildbin-libdir/Rdisop/libs/
-rwx------+ 1 biocbuild None 2806048 2010-04-22 11:50 src/winlibs/libims-0.dll
-rwx------+ 1 biocbuild None 2806048 2010-04-22 11:50 src/winlibs/libims.dll
libs in instal directory...
total 5488
-rwxr-xr-x 1 biocbuild None 2806048 2010-10-04 21:07 libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 2010-10-04 21:07 libims.dll
** libs
making DLL ...
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -I./imslib/src -I../RcppSrc/ -O2 -Wall -c disop.cpp -o disop.o
disop.cpp: In function 'bool isValidMyNitrogenRule(const ims::ComposedElement&, int)':
disop.cpp:124: warning: unused variable 'parityeven'
disop.cpp: In function 'SEXPREC* decomposeIsotopes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:211: warning: comparison between signed and unsigned integer expressions
disop.cpp:214: warning: comparison between signed and unsigned integer expressions
disop.cpp:222: warning: comparison between signed and unsigned integer expressions
disop.cpp:222: warning: comparison between signed and unsigned integer expressions
disop.cpp:174: warning: unused variable 'number_molecules_shown'
disop.cpp: In function 'SEXPREC* calculateScore(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:357: warning: comparison between signed and unsigned integer expressions
disop.cpp:357: warning: comparison between signed and unsigned integer expressions
disop.cpp:374: warning: comparison between signed and unsigned integer expressions
disop.cpp:377: warning: comparison between signed and unsigned integer expressions
disop.cpp:381: warning: comparison between signed and unsigned integer expressions
disop.cpp:381: warning: comparison between signed and unsigned integer expressions
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&, int)':
disop.cpp:797: warning: deprecated conversion from string constant to 'char*'
disop.cpp:799: warning: deprecated conversion from string constant to 'char*'
disop.cpp:801: warning: deprecated conversion from string constant to 'char*'
disop.cpp:803: warning: deprecated conversion from string constant to 'char*'
disop.cpp:804: warning: deprecated conversion from string constant to 'char*'
disop.cpp:805: warning: deprecated conversion from string constant to 'char*'
g++ -shared -s -static-libgcc -o Rdisop.dll tmp.def disop.o -L./winlibs -lims -L../RcppSrc/ -lRcpp -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
Info: resolving ims::IsotopeDistribution::ABUNDANCES_SUM_ERROR by linking to __imp___ZN3ims19IsotopeDistribution20ABUNDANCES_SUM_ERRORE (auto-import)
Info: resolving ims::IsotopeDistribution::SIZE by linking to __imp___ZN3ims19IsotopeDistribution4SIZEE (auto-import)
Info: resolving vtable for ims::Alphabetby linking to __imp___ZTVN3ims8AlphabetE (auto-importc:/rtools211/mingw/bin/../lib/gcc/mingw32/4.2.1-sjlj/../../../../mingw32/bin/ld.exe: warning: auto-importing has been activated without --enable-auto-import specified on the command line.
This should work unless it involves constant data structures referencing symbols from auto-imported DLLs.)
installing to E:/biocbld/bbs-2.6-bioc/meat/Rdisop.buildbin-libdir/Rdisop/libs
... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rdisop' as Rdisop_1.8.0.zip
* DONE (Rdisop)