Package: ArrayExpress

Version: 1.8.0

Command: chmod a+r ArrayExpress -R && E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build ArrayExpress

StartedAt: 2010-10-04 15:01:53 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 15:02:12 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 19.3 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file 'ArrayExpress/DESCRIPTION' ... OK
* preparing 'ArrayExpress':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package 'ArrayExpress' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ArrayExpress)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

trying URL 'http://www.ebi.ac.uk/microarray-as/ae/xml/experiments?keywords=pneumonia&species=homo+sapiens'
Content type 'text/xml;charset=UTF-8' length 113542 bytes (110 Kb)
opened URL
downloaded 110 Kb


Error: processing vignette 'ArrayExpress.Rnw' failed with diagnostics:
 chunk 1 (label=queryAE) 
Error in data.frame(ID = ID, Raw = Raw, Processed = Processed, ReleaseDate = date,  : 
  arguments imply differing number of rows: 19, 15, 16
Execution halted