* checking for file 'MotIV/DESCRIPTION' ... OK
* preparing 'MotIV':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'MotIV' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
making DLL ...
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O2 -Wall -c Alignment.cpp -o Alignment.o
Alignment.cpp: In member function 'virtual double SmithWatermanAffine::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:789: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double NeedlemanWunsch::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:588: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWatermanUngappedExtended::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:422: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWaterman::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:240: warning: 'revScore' may be used uninitialized in this function
Alignment.cpp:240: warning: 'forScore' may be used uninitialized in this function
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O2 -Wall -c ColumnComp.cpp -o ColumnComp.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O2 -Wall -c DeclareAll.cpp -o DeclareAll.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O2 -Wall -c Motif.cpp -o Motif.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O2 -Wall -c MotifMatch.cpp -o MotifMatch.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O2 -Wall -c PlatformSupport.cpp -o PlatformSupport.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O2 -Wall -c RandPSSMGen.cpp -o RandPSSMGen.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O2 -Wall -c generateScoresDB.cpp -o generateScoresDB.o
g++ -shared -s -static-libgcc -o MotIV.dll tmp.def Alignment.o ColumnComp.o DeclareAll.o Motif.o MotifMatch.o PlatformSupport.o RandPSSMGen.o generateScoresDB.o -lws2_32 -LC:/gsl/bin -lgsl -lgslcblas -lm -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/tmpdir/Rinst420835879/MotIV/libs
... done
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "MotIV"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (MotIV)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'MotIV_1.1.3.tar.gz'