Package: LMGene

Version: 1.17.0

Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes LMGene_1.17.0.tar.gz

StartedAt: 2009-12-07 17:41:16 -0800 (Mon, 07 Dec 2009)

EndedAt: 2009-12-07 17:42:30 -0800 (Mon, 07 Dec 2009)

EllapsedTime: 74.5 seconds

RetCode: 0

Status: OK

CheckDir: LMGene.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/LMGene.Rcheck'
* using R version 2.11.0 Under development (unstable) (2009-11-10 r50388)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LMGene/DESCRIPTION' ... OK
* this is package 'LMGene' version '1.17.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LMGene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: GetLMObj.Rd:14-15: Dropping empty section \details
prepare_Rd: GetLMObj.Rd:20-21: Dropping empty section \note
prepare_Rd: GetLMObj.Rd:18: Dropping empty section \references
prepare_Rd: GetLMObj.Rd:22: Dropping empty section \seealso
prepare_Rd: lnormeS.Rd:17-19: Dropping empty section \details
prepare_Rd: lnormeS.Rd:25-26: Dropping empty section \note
prepare_Rd: mlm2lm.Rd:22: Dropping empty section \seealso
prepare_Rd: msa.Rd:18: Dropping empty section \seealso
prepare_Rd: psmeans.Rd:29-30: Dropping empty section \note
prepare_Rd: psmeans.Rd:27: Dropping empty section \references
prepare_Rd: psmeans.Rd:31: Dropping empty section \seealso
prepare_Rd: sample.ind.Rd:14-16: Dropping empty section \details
prepare_Rd: transeS.Rd:19-21: Dropping empty section \details
prepare_Rd: transeS.Rd:27-28: Dropping empty section \note
prepare_Rd: transeS.Rd:25: Dropping empty section \references
prepare_Rd: transeS.Rd:29: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'LMGene' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
** help
*** installing help indices
** building package indices ...
* DONE (LMGene)