* checking for file 'GeneRegionScan/DESCRIPTION' ... OK
* preparing 'GeneRegionScan':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package ‘GeneRegionScan’ ...
** R
** data
** exec
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:Biobase :
updateObject
The following object(s) are masked from package:base :
Map,
cbind,
mapply,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rbind,
rep.int,
table
** help
*** installing help indices
** building package indices ...
* DONE (GeneRegionScan)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Biostrings
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:Biobase :
updateObject
The following object(s) are masked from package:base :
Map,
cbind,
mapply,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rbind,
rep.int,
table
Error: processing vignette 'GeneRegionScan.Rnw' failed with diagnostics:
chunk 6 (label=plot1)
Error in grep("\\\\", gene, extended = FALSE) :
unused argument(s) (extended = FALSE)
Execution halted