GSEAlm 1.7.1
Assaf Oron
| Bioconductor Changelog | | Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GSEAlm | | Last Changed Rev: 42708 / Revision: 43434 | | Last Changed Date: 2009-10-28 17:21:03 -0700 (Wed, 28 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| pitt | Mac OS X Tiger (10.4.11) / i386 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | ERROR | skipped | skipped |
* checking for file 'GSEAlm/DESCRIPTION' ... OK
* preparing 'GSEAlm':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package 'GSEAlm' ...
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
Warning: bad markup (extra space?) at gsealmPerm.Rd:27:20
Warning: bad markup (extra space?) at gsealmPerm.Rd:57:15
Warning: bad markup (extra space?) at gsealmPerm.Rd:58:15
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (GSEAlm)
* creating vignettes ... ERROR
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Category
Loading required package: graph
Loading required package: DBI
Loading required package: org.Hs.eg.db
Attaching package: 'GSEAlm'
The following object(s) are masked from package:base :
identity
Error: processing vignette 'GSEAlm.Rnw' failed with diagnostics:
chunk 14 (label=lm3FacInfPhenotype)
Error in gsealmPerm(workingEset[LeafGenes, ], ~mol.biol + sex + kinet, :
object 'detailed' not found
In addition: Warning message:
unexpected band notation: Xq13.3-Xq21.2 using Xq
Execution halted