AnnotationDbi 1.9.2
Biocore Team c/o BioC user list
| Bioconductor Changelog | | Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/AnnotationDbi | | Last Changed Rev: 42875 / Revision: 43434 | | Last Changed Date: 2009-11-09 12:14:21 -0800 (Mon, 09 Nov 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| pitt | Mac OS X Tiger (10.4.11) / i386 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | ERROR | skipped | skipped |
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* preparing 'AnnotationDbi':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package ‘AnnotationDbi’ ...
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
** help
*** installing help indices
** building package indices ...
* DONE (AnnotationDbi)
* creating vignettes ... ERROR
Loading required package: org.Hs.eg.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: GO.db
trying URL 'http://www.targetscan.org/vert_50/vert_50_data_download/Predicted_Targets_Info.txt.zip'
Content type 'application/zip' length 7330970 bytes (7.0 Mb)
opened URL
==================================================
downloaded 7.0 Mb
trying URL 'http://www.targetscan.org/vert_50/vert_50_data_download/miR_Family_Info.txt.zip'
Content type 'application/zip' length 39867 bytes (38 Kb)
opened URL
==================================================
downloaded 38 Kb
trying URL 'ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdmp.zip'
ftp data connection made, file length 14734073 bytes
opened URL
==================================================
downloaded 14.1 Mb
Warning in install.packages(paste(tempdir(), sep = .Platform$file.sep, "targetscan.Hs.eg.db"), :
argument 'lib' is missing: using '/tmp/Rinst2997280330'
tar (child): /tmp/Rtmps23Row/targetscan.Hs.eg.db: Cannot read: Is a directory
tar (child): At beginning of tape, quitting now
tar (child): Error is not recoverable: exiting now
gzip: stdin: unexpected end of file
tar: Child returned status 2
tar: Error exit delayed from previous errors
Error: processing vignette 'NewSchema.Rnw' failed with diagnostics:
chunk 24 (label=try new package)
Error in library(targetscan.Hs.eg.db) :
there is no package called 'targetscan.Hs.eg.db'
In addition: Warning messages:
1: In .local(x, ...) : returned vector has duplicated names
2: In readLines(cin) :
incomplete final line found on '/tmp/Rtmps23Row/targetscan/LICENSE'
3: 'tar' returned non-zero exit code 512
4: In file.rename(file.path(tmpDir, pkgname), instPath) :
cannot rename file '/tmp/Rinst2997280330/file1ccd96/targetscan.Hs.eg.db' to '/tmp/Rinst2997280330/targetscan.Hs.eg.db', reason 'No such file or directory'
5: unable to move temporary installation '/tmp/Rinst2997280330/file1ccd96/targetscan.Hs.eg.db' to '/tmp/Rinst2997280330/targetscan.Hs.eg.db'
Execution halted