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Package 40/353HostnameOS / ArchBUILDCHECKBUILD BIN
BGmix 1.6.0
Alex Lewin
Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/BGmix
Last Changed Rev: 42684 / Revision: 43539
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: BGmix
Version: 1.6.0
Command: /home/biocbuild/bbs-2.5-bioc/R/bin/R CMD build BGmix
StartedAt: 2009-12-14 02:01:31 -0800 (Mon, 14 Dec 2009)
EndedAt: 2009-12-14 02:01:55 -0800 (Mon, 14 Dec 2009)
EllapsedTime: 23.5 seconds
RetCode: 0
Status: OK
PackageFile: BGmix_1.6.0.tar.gz
PackageFileSize: 1.219 MiB

Command output

* checking for file 'BGmix/DESCRIPTION' ... OK
* preparing 'BGmix':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package ‘BGmix’ ...
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for cos in -lm... yes
Untarring Boost header files...
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include -I ../boostIncl -I/usr/local/include    -fpic  -g -O2 -Wall -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
BGmix_main.cpp: In function ‘void BGmix(int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double*, double*, double*, int*, int&, double*, int*, char**, char**, char**, char**, char**)’:
BGmix_main.cpp:165: warning: suggest parentheses around comparison in operand of &
BGmix_main.cpp:178: warning: suggest parentheses around comparison in operand of &
BGmix_main.cpp:179: warning: suggest parentheses around comparison in operand of &
BGmix_main.cpp:546: warning: suggest parentheses around comparison in operand of |
BGmix_main.cpp:621: warning: suggest parentheses around comparison in operand of |
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include -I ../boostIncl -I/usr/local/include    -fpic  -g -O2 -Wall -DUSING_R -c rundir.cpp -o rundir.o
g++ -I/home/biocbuild/bbs-2.5-bioc/R/include -I ../boostIncl -I/usr/local/include    -fpic  -g -O2 -Wall -DUSING_R -c updates_BGmix.cpp -o updates_BGmix.o
updates_BGmix.cpp: In function ‘void update_z_beta1_joint2(int*, double**, int*, int&, int&, double*, double&, double&, double**, double**, double**, int*, double**, double**, int&, int&, int&, int*, int&, int&, int&, Random&)’:
updates_BGmix.cpp:192: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:200: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp: In function ‘void predict(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double**, double*, double**, double**, double**, double**, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)’:
updates_BGmix.cpp:870: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:883: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:883: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:893: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp: In function ‘void predict_t(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)’:
updates_BGmix.cpp:992: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:1005: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:1005: warning: suggest parentheses around comparison in operand of |
updates_BGmix.cpp:1015: warning: suggest parentheses around comparison in operand of |
g++ -shared -L/usr/local/lib64 -o BGmix.so BGmix_main.o rundir.o updates_BGmix.o -lm -L/home/biocbuild/bbs-2.5-bioc/R/lib -lR
rm -r ../boostIncl 
** R
** data
** inst
** preparing package for lazy loading
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
** help
*** installing help indices
** building package indices ...
* DONE (BGmix)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'BGmix_1.6.0.tar.gz'