ontoTools 1.22.0
Vince Carey
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/ontoTools | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ OK ] | OK | OK |
* checking for file 'ontoTools/DESCRIPTION' ... OK
* preparing 'ontoTools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package ‘ontoTools’ ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Package SparseM (0.80) loaded.
To cite, see citation("SparseM")
Attaching package: 'SparseM'
The following object(s) are masked from package:stats :
model.response
The following object(s) are masked from package:base :
backsolve,
chol
Loading required package: DBI
Creating a generic for "colSums" in package "ontoTools"
(the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a generic for "rowSums" in package "ontoTools"
(the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a new generic function for "grep" in "ontoTools"
In method for function "grep": expanding the signature to include
omitted arguments in definition: invert = "missing"
** help
*** installing help indices
>>> Building/Updating help pages for package 'ontoTools'
Formats: text html latex example
Note: removing empty section \references in file 'A.csr.Rd'
A.csr text html latex
Note: removing empty section \value in file 'GDI.Rd'
Note: removing empty section \references in file 'GDI.Rd'
GDI text html latex example
LLGOMFcp text html latex
OOC-class text html latex example
Note: removing empty section \references in file 'SGDIvocab.Rd'
SGDIvocab text html latex example
Note: removing empty section \value in file 'STMA.Rd'
Note: removing empty section \details in file 'STMA.Rd'
Note: removing empty section \references in file 'STMA.Rd'
STMA text html latex example
Note: removing empty section \details in file 'accessMat.Rd'
Note: removing empty section \examples in file 'accessMat.Rd'
accessMat text html latex
buildGOgraph text html latex example
Note: removing empty section \examples in file 'compoundGraph-class.Rd'
compoundGraph-class text html latex
depthStruct text html latex example
gomfAmat text html latex
Note: removing empty section \source in file 'litOnto.Rd'
Note: removing empty section \references in file 'litOnto.Rd'
litOnto text html latex
namedSparse-class text html latex example
ontology-class text html latex example
Note: removing empty section \references in file 'ooMapLL2GOMFdemo.Rd'
ooMapLL2GOMFdemo text html latex
otkvEnv2namedSparse text html latex example
Note: removing empty section \examples in file 'rootedDAG-class.Rd'
rootedDAG-class text html latex
semsim text html latex example
Note: removing empty section \references in file 'taggedHierNomenclature-class.Rd'
taggedHierNomenclature-class text html latex example
toDot-methods text html latex example
** building package indices ...
* DONE (ontoTools)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ontoTools_1.22.0.tar.gz'