Back to the "Multiple platform build/check report"

Package 52/64HostnameOS / ArchBUILDCHECKBUILD BIN
pumadata 1.0.1
Richard Pearson
Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pumadata
Last Changed Rev: 699 / Revision: 760
Last Changed Date: 2008-08-28 09:23:53 -0700 (Thu, 28 Aug 2008)
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ OK ] OK 
Package: pumadata
Version: 1.0.1
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes pumadata_1.0.1.tar.gz
StartedAt: 2009-04-10 02:03:07 -0700 (Fri, 10 Apr 2009)
EndedAt: 2009-04-10 02:04:03 -0700 (Fri, 10 Apr 2009)
EllapsedTime: 55.5 seconds
RetCode: 0
Status: OK
CheckDir: pumadata.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-data-experiment/meat/pumadata.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'pumadata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pumadata' version '1.0.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pumadata' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating pumadata-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating pumadata-manual.tex ... OK
* checking pumadata-manual.tex using pdflatex ... OK

pumadata.Rcheck/00install.out:

* Installing *source* package 'pumadata' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: puma
Loading required package: affy
** help
 >>> Building/Updating help pages for package 'pumadata'
     Formats: text html latex example 
  affybatch.estrogen                text    html    latex
  eset_estrogen_comb                text    html    latex   example
  eset_estrogen_mmgmos              text    html    latex   example
  eset_estrogen_rma                 text    html    latex   example
  pumapca_estrogen                  text    html    latex   example
** building package indices ...
* DONE (pumadata)