encoDnaseI 0.0-17
VJ Carey
| Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/encoDnaseI | | Last Changed Rev: 656 / Revision: 760 | | Last Changed Date: 2008-05-27 11:03:17 -0700 (Tue, 27 May 2008) |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.6) / i386 | ERROR | skipped | skipped |
* checking for file 'encoDnaseI/DESCRIPTION' ... OK
* preparing 'encoDnaseI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-data-experiment/tmpdir/Rinst462487780
---------- Making package encoDnaseI ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package encoDnaseI for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: lattice
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'encoDnaseI'
Formats: text html latex example chm
ALICOR text html latex example chm
missing link(s): snpScreenResult-class
encoDnaseI text html latex example chm
hg18track-class text html latex example chm
missing link(s): eSet-class VersionedBiobase-class Versioned-class
juxtaPlot text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-data-experiment\meat\encoDnaseI\chm\encoDnaseI.chm
Compile time: 0 minutes, 5 seconds
5 Topics
36 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-data-experiment\meat\encoDnaseI\chm\encoDnaseI.chm, 24,119 bytes
Compression decreased file by 5,803 bytes.
adding MD5 sums
* DONE (encoDnaseI)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: lattice
Loading required package: GGBase
Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: annotate
Loading required package: xtable
Loading required package: graph
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Attaching package: 'GGBase'
The following object(s) are masked from package:encoDnaseI :
chrnum
Loading required package: geneplotter
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Attaching package: 'geneplotter'
The following object(s) are masked from package:lattice :
panel.smoothScatter
Loading required package: RColorBrewer
Loading required package: Biostrings
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:Biobase :
annotation
The following object(s) are masked from package:base :
cbind,
rbind,
sapply
Attaching package: 'Biostrings'
The following object(s) are masked from package:graph :
complement
The following object(s) are masked from package:base :
chartr,
order,
substr,
substring
Loading required package: rtracklayer
Loading required package: RCurl
Attaching package: 'rtracklayer'
The following object(s) are masked from package:encoDnaseI :
dataVals
Loading required package: rpart
Loading required package: illuminaHumanv1.db
Error: processing vignette 'dnaseUse.Rnw' failed with diagnostics:
chunk 5 (label=dogg)
Error in function (classes, fdef, mtable) :
unable to find an inherited method for function "snpLocs.Hs", for signature "character", "missing"
Execution halted