splicegear 1.14.0
Laurent Gautier
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/splicegear | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/splicegear.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'splicegear/DESCRIPTION' ... OK
* this is package 'splicegear' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'splicegear' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating splicegear-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating splicegear-manual.tex ... OK
* checking splicegear-manual.tex using pdflatex ... OK
* Installing *source* package 'splicegear' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: grid
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: XML
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
** help
>>> Building/Updating help pages for package 'splicegear'
Formats: text html latex example
Probes-class text html latex example
SpliceExprSet-class text html latex example
SpliceSites-class text html latex example
SpliceSitesGenomic-class text html latex example
as.data.frame.SpliceExprSet text html latex example
barplot.SpliceSites text html latex example
buildSpliceSites text html latex example
getRelSignStrength text html latex example
grid.helpers text html latex
grid.plot.SpliceSites text html latex example
Note: removing empty section \details in file 'isProbeOnSpliceSite.Rd'
Note: removing empty section \examples in file 'isProbeOnSpliceSite.Rd'
isProbeOnSpliceSite text html latex
matchprobes2Probes text html latex
plot.SpliceExprSet text html latex example
plot.SpliceSites text html latex example
plot.SpliceSitesGenomic text html latex example
Note: removing empty section \details in file 'sort.SpliceExprSet.Rd'
sort.SpliceExprSet text html latex example
Note: removing empty section \source in file 'spliceset.Rd'
spliceset text html latex example
split.SpliceSites text html latex example
** building package indices ...
* DONE (splicegear)