simulatorAPMS 1.14.0
Tony Chiang
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/simulatorAPMS | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/simulatorAPMS.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'simulatorAPMS/DESCRIPTION' ... OK
* this is package 'simulatorAPMS' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'simulatorAPMS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating simulatorAPMS-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating simulatorAPMS-manual.tex ... OK
* checking simulatorAPMS-manual.tex using pdflatex ... OK
* Installing *source* package 'simulatorAPMS' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: apComplex
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: org.Sc.sgd.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: ScISI
Loading required package: GO.db
Loading required package: GOstats
Loading required package: annotate
Loading required package: xtable
Attaching package: 'annotate'
The following object(s) are masked from package:Rgraphviz :
toFile
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: RpsiXML
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:xtable :
label,
label<-
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:Rgraphviz :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Loading required package: ppiStats
Loading required package: ppiData
Loading required package: lattice
Loading required package: RColorBrewer
** help
>>> Building/Updating help pages for package 'simulatorAPMS'
Formats: text html latex example
Note: removing empty section \source in file 'APComEX.Rd'
Note: removing empty section \references in file 'APComEX.Rd'
APComEX text html latex example
Note: removing empty section \source in file 'PPIEX.Rd'
Note: removing empty section \references in file 'PPIEX.Rd'
PPIEX text html latex example
Note: removing empty section \details in file 'TSNMatrix.Rd'
TSNMatrix text html latex example
applyDeformationError text html latex example
applyFNErrors text html latex example
applyFPErrors text html latex example
applyStickyError text html latex example
Note: removing empty section \details in file 'compIndep.Rd'
compIndep text html latex example
Note: unmatched right brace in file 'filteredProt.Rd' on or after line 14
filteredProt text html latex example
Note: removing empty section \source in file 'fullSimEX.Rd'
Note: removing empty section \references in file 'fullSimEX.Rd'
fullSimEX text html latex example
Note: removing empty section \source in file 'missedProtEX.Rd'
Note: removing empty section \references in file 'missedProtEX.Rd'
missedProtEX text html latex example
Note: removing empty section \source in file 'missedProtHMSPCI.Rd'
Note: removing empty section \details in file 'missedProtHMSPCI.Rd'
Note: removing empty section \references in file 'missedProtHMSPCI.Rd'
missedProtHMSPCI text html latex example
recordSticky text html latex example
runAPComplex text html latex example
runCompIndep text html latex example
Note: removing empty section \source in file 'runSimEX.Rd'
Note: removing empty section \references in file 'runSimEX.Rd'
runSimEX text html latex example
runSimulators text html latex example
Note: removing empty section \source in file 'simEX.Rd'
Note: removing empty section \references in file 'simEX.Rd'
simEX text html latex example
simulator text html latex example
simulatorD text html latex example
simulatorS text html latex example
Note: removing empty section \source in file 'vBaits.Rd'
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Note: removing empty section \references in file 'vBaits.Rd'
vBaits text html latex example
Note: removing empty section \source in file 'vBaitsEX.Rd'
Note: removing empty section \references in file 'vBaitsEX.Rd'
vBaitsEX text html latex example
Note: removing empty section \source in file 'vDeformEX.Rd'
Note: removing empty section \details in file 'vDeformEX.Rd'
Note: removing empty section \references in file 'vDeformEX.Rd'
vDeformEX text html latex example
vDeformed text html latex example
Note: removing empty section \source in file 'vDeformedEX.Rd'
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Note: removing empty section \references in file 'vDeformedEX.Rd'
vDeformedEX text html latex example
Note: removing empty section \source in file 'vStickyEX.Rd'
Note: removing empty section \details in file 'vStickyEX.Rd'
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vStickyEX text html latex example
** building package indices ...
* DONE (simulatorAPMS)