pamr 1.40.1
Rob Tibshirani
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/pamr | | Last Changed Rev: 38931 / Revision: 38965 | | Last Changed Date: 2009-04-17 09:17:15 -0700 (Fri, 17 Apr 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | [ OK ] |
INSTALLATION WITH 'R CMD INSTALL --library=pamr.buildbin-libdir pamr_1.40.1.tar.gz'
* Installing *source* package 'pamr' ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c cox_func.c -o cox_func.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c knnimpute.f -o knnimpute.o
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c cox_func.c -o cox_func.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c knnimpute.f -o knnimpute.o
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c cox_func.c -o cox_func.o
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c knnimpute.f -o knnimpute.o
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o -lgfortran -lSystemStubs -L/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64/libRblas.dylib -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c cox_func.c -o cox_func.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c knnimpute.f -o knnimpute.o
knnimpute.f: In function 'twomis':
knnimpute.f:132: warning: 'dold' may be used uninitialized in this function
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'pamr'
Formats: text html latex example
Note: removing empty section \source in file 'khan.Rd'
Note: removing empty section \format in file 'khan.Rd'
Note: removing empty section \references in file 'khan.Rd'
khan text html latex
Note: ignoring empty \keyword entries in file 'pamr.adaptthresh.Rd'
pamr.adaptthresh text html latex example
Note: ignoring empty \keyword entries in file 'pamr.batchadjust.Rd'
Note: removing empty section \references in file 'pamr.batchadjust.Rd'
pamr.batchadjust text html latex example
Note: ignoring empty \keyword entries in file 'pamr.confusion.Rd'
Note: removing empty section \references in file 'pamr.confusion.Rd'
pamr.confusion text html latex example
Note: ignoring empty \keyword entries in file 'pamr.confusion.survival.Rd'
Note: removing empty section \details in file 'pamr.confusion.survival.Rd'
Note: removing empty section \references in file 'pamr.confusion.survival.Rd'
Note: removing empty section \examples in file 'pamr.confusion.survival.Rd'
pamr.confusion.survival text html latex
Note: ignoring empty \keyword entries in file 'pamr.cv.Rd'
Note: removing empty section \references in file 'pamr.cv.Rd'
pamr.cv text html latex example
Note: ignoring empty \keyword entries in file 'pamr.decorrelate.Rd'
pamr.decorrelate text html latex example
Note: ignoring empty \keyword entries in file 'pamr.fdr.Rd'
Note: removing empty section \references in file 'pamr.fdr.Rd'
pamr.fdr text html latex example
Note: ignoring empty \keyword entries in file 'pamr.from.excel.Rd'
Note: removing empty section \references in file 'pamr.from.excel.Rd'
pamr.from.excel text html latex
Note: ignoring empty \keyword entries in file 'pamr.geneplot.Rd'
Note: removing empty section \references in file 'pamr.geneplot.Rd'
pamr.geneplot text html latex example
Note: ignoring empty \keyword entries in file 'pamr.indeterminate.Rd'
Note: removing empty section \details in file 'pamr.indeterminate.Rd'
Note: removing empty section \references in file 'pamr.indeterminate.Rd'
pamr.indeterminate text html latex example
pamr.internal text html latex
Note: ignoring empty \keyword entries in file 'pamr.knnimpute.Rd'
pamr.knnimpute text html latex
Note: ignoring empty \keyword entries in file 'pamr.listgenes.Rd'
Note: removing empty section \references in file 'pamr.listgenes.Rd'
pamr.listgenes text html latex example
Note: ignoring empty \keyword entries in file 'pamr.makeclasses.Rd'
Note: removing empty section \references in file 'pamr.makeclasses.Rd'
pamr.makeclasses text html latex example
Note: ignoring empty \keyword entries in file 'pamr.menu.Rd'
Note: removing empty section \value in file 'pamr.menu.Rd'
Note: removing empty section \references in file 'pamr.menu.Rd'
pamr.menu text html latex example
Note: ignoring empty \keyword entries in file 'pamr.plotcen.Rd'
Note: removing empty section \references in file 'pamr.plotcen.Rd'
pamr.plotcen text html latex example
Note: ignoring empty \keyword entries in file 'pamr.plotcv.Rd'
Note: removing empty section \value in file 'pamr.plotcv.Rd'
Note: removing empty section \references in file 'pamr.plotcv.Rd'
pamr.plotcv text html latex example
Note: ignoring empty \keyword entries in file 'pamr.plotcvprob.Rd'
Note: removing empty section \value in file 'pamr.plotcvprob.Rd'
Note: removing empty section \references in file 'pamr.plotcvprob.Rd'
pamr.plotcvprob text html latex example
Note: ignoring empty \keyword entries in file 'pamr.plotfdr.Rd'
Note: removing empty section \value in file 'pamr.plotfdr.Rd'
Note: removing empty section \references in file 'pamr.plotfdr.Rd'
pamr.plotfdr text html latex example
Note: ignoring empty \keyword entries in file 'pamr.plotstrata.Rd'
Note: removing empty section \value in file 'pamr.plotstrata.Rd'
Note: removing empty section \details in file 'pamr.plotstrata.Rd'
Note: removing empty section \references in file 'pamr.plotstrata.Rd'
pamr.plotstrata text html latex example
Note: ignoring empty \keyword entries in file 'pamr.plotsurvival.Rd'
Note: removing empty section \value in file 'pamr.plotsurvival.Rd'
Note: removing empty section \details in file 'pamr.plotsurvival.Rd'
Note: removing empty section \references in file 'pamr.plotsurvival.Rd'
pamr.plotsurvival text html latex example
Note: ignoring empty \keyword entries in file 'pamr.predict.Rd'
Note: removing empty section \references in file 'pamr.predict.Rd'
pamr.predict text html latex example
Note: ignoring empty \keyword entries in file 'pamr.predictmany.Rd'
Note: removing empty section \details in file 'pamr.predictmany.Rd'
Note: removing empty section \references in file 'pamr.predictmany.Rd'
pamr.predictmany text html latex example
Note: ignoring empty \keyword entries in file 'pamr.surv.to.class2.Rd'
pamr.surv.to.class2 text html latex example
Note: ignoring empty \keyword entries in file 'pamr.test.errors.surv.compute.Rd'
Note: removing empty section \references in file 'pamr.test.errors.surv.compute.Rd'
pamr.test.errors.surv.compute text html latex example
Note: ignoring empty \keyword entries in file 'pamr.to.excel.Rd'
pamr.to.excel text html latex
Note: ignoring empty \keyword entries in file 'pamr.train.Rd'
pamr.train text html latex example
** building package indices ...
* DONE (pamr)