nem 2.6.0
Florian Markowetz
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/nem | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/nem.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'nem/DESCRIPTION' ... OK
* this is package 'nem' version '2.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'nem' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
optimizecoregraph: no visible binding for global variable 'verbose'
optimizecoregraph: no visible binding for global variable 'IC.mode'
optimizecoregraph: no visible binding for global variable 'nu'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating nem-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating nem-manual.tex ... OK
* checking nem-manual.tex using pdflatex ... OK
* Installing *source* package 'nem' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: e1071
Loading required package: class
Loading required package: graph
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: RBGL
Attaching package: 'RBGL'
The following object(s) are masked from package:e1071 :
extractPath
Loading required package: time
Loading required package: cluster
Loading required package: bootstrap
Loading required package: RColorBrewer
Loading required package: plotrix
** help
>>> Building/Updating help pages for package 'nem'
Formats: text html latex example
Note: removing empty section \seealso in file 'BFSlevel.Rd'
BFSlevel text html latex example
BoutrosRNAi2002 text html latex example
FULLmLL text html latex example
SCCgraph text html latex example
closest.transitive.greedy text html latex
enumerate.models text html latex example
generateNetwork text html latex example
getDensityMatrix text html latex
infer.edge.type text html latex example
Note: removing empty section \details in file 'internal.Rd'
internal text html latex
Note: removing empty section \note in file 'local.model.prior.Rd'
Note: removing empty section \references in file 'local.model.prior.Rd'
local.model.prior text html latex example
mLL text html latex example
moduleNetwork text html latex example
nem.BN text html latex
nem text html latex example
nem.bootstrap text html latex example
nem.calcSignificance text html latex example
nem.consensus text html latex example
nem.cont.preprocess text html latex example
nem.discretize text html latex example
nem.greedy text html latex example
nem.greedyMAP text html latex example
nem.jackknife text html latex example
nemModelSelection text html latex example
network.AIC text html latex example
pairwise.posterior text html latex example
plot.nem text html latex
plotEffects text html latex example
prune.graph text html latex example
score text html latex example
selectEGenes text html latex example
Note: removing empty section \seealso in file 'subsets.Rd'
subsets text html latex example
transitive.closure text html latex example
transitive.projections text html latex
transitive.reduction text html latex example
triples.posterior text html latex example
** building package indices ...
* DONE (nem)