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Package 95/294HostnameOS / ArchBUILDCHECKBUILD BIN
gaga 1.2.0
David Rossell
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/gaga
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: gaga
Version: 1.2.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes gaga_1.2.0.tar.gz
StartedAt: 2009-04-18 18:48:09 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:48:56 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 47.0 seconds
RetCode: 0
Status: OK
CheckDir: gaga.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/gaga.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'gaga/DESCRIPTION' ... OK
* this is package 'gaga' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaga' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating gaga-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gaga-manual.tex ... OK
* checking gaga-manual.tex using pdflatex ... OK

gaga.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/gaga.Rcheck


---------- Making package gaga ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making cseqdesma.d from cseqdesma.c
making cstat.d from cstat.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c cseqdesma.c -o cseqdesma.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c cstat.c -o cstat.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i gaga_res.rc -o gaga_res.o
gcc  -std=gnu99  -shared -s  -o gaga.dll gaga.def cseqdesma.o cstat.o gaga_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'gaga'
     Formats: text html latex example chm 
Note: removing empty section \examples in file 'checkfit.Rd'
Note: removing empty section \examples in file 'checkfit.Rd'
  checkfit                          text    html    latex           chm
  classpred                         text    html    latex   example chm
Note: removing empty section \examples in file 'dcgamma.Rd'
Note: removing empty section \examples in file 'dcgamma.Rd'
  dcgamma                           text    html    latex           chm
  findgenes                         text    html    latex   example chm
  fitGG                             text    html    latex   example chm
  geneclus                          text    html    latex   example chm
Note: removing empty section \examples in file 'getpar.Rd'
Note: removing empty section \examples in file 'getpar.Rd'
  getpar                            text    html    latex           chm
  parest                            text    html    latex   example chm
Note: removing empty section \examples in file 'posmeansGG.Rd'
Note: removing empty section \examples in file 'posmeansGG.Rd'
  posmeansGG                        text    html    latex           chm
Note: removing empty section \examples in file 'powclasspred.Rd'
Note: removing empty section \examples in file 'powclasspred.Rd'
  powclasspred                      text    html    latex           chm
Note: removing empty section \details in file 'print.gagaclus.Rd'
Note: removing empty section \details in file 'print.gagaclus.Rd'
  print.gagaclus                    text    html    latex           chm
  print.gagafit                     text    html    latex           chm
Note: removing empty section \details in file 'print.gagahyp.Rd'
Note: removing empty section \details in file 'print.gagahyp.Rd'
  print.gagahyp                     text    html    latex           chm
  simGG                             text    html    latex   example chm
Note: removing empty section \examples in file 'simnewsamples.Rd'
Note: removing empty section \examples in file 'simnewsamples.Rd'
  simnewsamples                     text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\gaga.Rcheck\00_pkg_src\gaga\chm\gaga.chm


Compile time: 0 minutes, 0 seconds
16	Topics
64	Local links
15	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\gaga.Rcheck\00_pkg_src\gaga\chm\gaga.chm, 39,307 bytes
Compression decreased file by 31,784 bytes.
  adding MD5 sums

* DONE (gaga)