flowCore 1.8.3
Nolwenn Le Meur
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/flowCore | | Last Changed Rev: 38169 / Revision: 38965 | | Last Changed Date: 2009-03-24 17:53:21 -0700 (Tue, 24 Mar 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/flowCore.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'flowCore/DESCRIPTION' ... OK
* this is package 'flowCore' version '1.8.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating flowCore-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating flowCore-manual.tex ... OK
* checking flowCore-manual.tex using pdflatex ... OK
* Installing *source* package 'flowCore' ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.c -o biexponential.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolytope.c -o inPolytope.o
inPolytope.c: In function 'inPolytope':
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o inPolytope.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.c -o biexponential.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c inPolytope.c -o inPolytope.o
inPolytope.c: In function 'inPolytope':
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o inPolytope.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.c -o biexponential.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolytope.c -o inPolytope.o
inPolytope.c: In function 'inPolytope':
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o inPolytope.o -L/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ppc64/libRblas.dylib -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.c -o biexponential.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolytope.c -o inPolytope.o
inPolytope.c: In function 'inPolytope':
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o inPolytope.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 0.5-01)
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: rpanel
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Package `rpanel', version 1.0-5
type help(rpanel) for summary information
Loading required package: ks
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
>>> Building/Updating help pages for package 'flowCore'
Formats: text html latex example
EHtrans-class text html latex example
GvHD text html latex
Subset-methods text html latex example
actionItem-class text html latex example
arcsinhTransform text html latex example
asinht-class text html latex example
biexponentialTransform text html latex example
Note: removing empty section \seealso in file 'characterOrTransformation-class.Rd'
characterOrTransformation-class text html latex example
coerce text html latex example
compensateActionItem-class text html latex example
compensateView-class text html latex example
compensatedParameter-class text html latex example
compensation-class text html latex example
concreteFilter-class text html latex
curv1Filter-class text html latex example
curv2Filter-class text html latex example
dg1polynomial-class text html latex example
each_col-methods text html latex example
ellipsoidGate text html latex example
exponential-class text html latex example
expressionFilter-class text html latex example
fcReference-class text html latex example
filter-and-methods text html latex
filter-class text html latex
filter-in-methods text html latex
filter-methods text html latex example
filter-on-methods text html latex example
filterDetails-methods text html latex
filterReference-class text html latex
filterResult-class text html latex example
filterResultList-class text html latex example
filterSet-class text html latex example
filterSummary-class text html latex example
filterSummaryList-class text html latex example
flowFrame-class text html latex example
flowSet-class text html latex example
fsApply text html latex example
gateActionItem-class text html latex example
gateView-class text html latex example
hyperlog-class text html latex example
identifier-methods text html latex example
invsplitscale-class text html latex example
keyword-methods text html latex example
kmeansFilter text html latex example
linearTransform text html latex example
lnTransform text html latex example
logTransform text html latex example
logarithm-class text html latex example
logicalFilterResult-class text html latex example
logicleTransform text html latex example
manyFilterResult-class text html latex example
multipleFilterResult-class text html latex example
norm2Filter-class text html latex example
normalization-class text html latex
normalizeActionItem-class text html latex example
normalizeView-class text html latex example
parameterFilter-class text html latex
parameterTransform-class text html latex
Note: removing empty section \seealso in file 'parameters-class.Rd'
parameters-class text html latex example
parameters-methods text html latex example
polygonGate text html latex example
Note: removing empty section \examples in file 'polytopeGate.Rd'
polytopeGate text html latex
quadGate text html latex example
quadratic-class text html latex example
quadraticTransform text html latex example
randomFilterResult-class text html latex
ratio-class text html latex example
read.FCS text html latex example
read.FCSheader text html latex example
read.flowSet text html latex example
rectangleGate text html latex example
sampleFilter-class text html latex example
scaleTransform text html latex example
setOperationFilter-class text html latex
Note: removing empty section \seealso in file 'singleParameterTransform-class.Rd'
singleParameterTransform-class text html latex example
sinht-class text html latex example
spillover-flowSet text html latex
split-methods text html latex example
splitScaleTransform text html latex example
splitscale-class text html latex example
squareroot-class text html latex example
summarizeFilter-methods text html latex
timeFilter-class text html latex example
transform-class text html latex example
transformActionItem-class text html latex example
transformFilter-class text html latex example
transformList-class text html latex example
transformMap-class text html latex example
Note: removing empty section \seealso in file 'transformReference-class.Rd'
transformReference-class text html latex example
transformView-class text html latex example
Note: removing empty section \seealso in file 'transformation-class.Rd'
transformation-class text html latex example
truncateTransform text html latex example
unitytransform-class text html latex example
view-class text html latex example
workFlow-class text html latex example
** building package indices ...
* DONE (flowCore)