annotationTools 1.12.0
Alexandre Kuhn
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/annotationTools | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/annotationTools.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'annotationTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'annotationTools' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annotationTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating annotationTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annotationTools-manual.tex ... OK
* checking annotationTools-manual.tex using pdflatex ... OK
* Installing *source* package 'annotationTools' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
>>> Building/Updating help pages for package 'annotationTools'
Formats: text html latex example
HG-U133_Plus_2_annot_part text html latex
HG-U133_Plus_2_ortholog_part text html latex
Mouse430_2_annot_part text html latex
annot_HGU133A text html latex
Note: removing empty section \references in file 'compactList.Rd'
compactList text html latex example
Note: removing empty section \references in file 'getANNOTATION.Rd'
getANNOTATION text html latex example
Note: removing empty section \references in file 'getGENEID.Rd'
getGENEID text html latex example
Note: removing empty section \references in file 'getGENEONTOLOGY.Rd'
getGENEONTOLOGY text html latex example
Note: removing empty section \references in file 'getGENESYMBOL.Rd'
getGENESYMBOL text html latex example
Note: removing empty section \references in file 'getGENETITLE.Rd'
getGENETITLE text html latex example
Note: removing empty section \references in file 'getHOMOLOG.Rd'
getHOMOLOG text html latex example
Note: removing empty section \references in file 'getMULTIANNOTATION.Rd'
getMULTIANNOTATION text html latex example
Note: removing empty section \references in file 'getOrthologousProbesets.Rd'
getOrthologousProbesets text html latex example
Note: removing empty section \references in file 'getPROBESET.Rd'
getPROBESET text html latex example
homologene_part text html latex
Note: removing empty section \references in file 'listToCharacterVector.Rd'
listToCharacterVector text html latex example
ortho text html latex
Note: removing empty section \references in file 'ps2ps.Rd'
ps2ps text html latex example
table_human text html latex
table_mouse text html latex
** building package indices ...
* DONE (annotationTools)