annaffy 1.14.0
Colin A. Smith
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/annaffy | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/annaffy.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'annaffy/DESCRIPTION' ... OK
* this is package 'annaffy' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annaffy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating annaffy-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annaffy-manual.tex ... OK
* checking annaffy-manual.tex using pdflatex ... OK
* Installing *source* package 'annaffy' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: KEGG.db
** help
>>> Building/Updating help pages for package 'annaffy'
Formats: text html latex example
aaf.character text html latex
aaf.goterm text html latex
aaf.handler text html latex
aaf.integer text html latex
aaf.raw text html latex
aafChromLoc-class text html latex
aafChromLoc text html latex example
aafChromosome-class text html latex
aafChromosome text html latex example
aafCytoband-class text html latex
aafCytoband text html latex example
aafDescription-class text html latex
aafDescription text html latex example
aafExpr text html latex
aafGO-class text html latex
aafGO text html latex example
aafGOItem-class text html latex
aafGenBank-class text html latex
aafGenBank text html latex example
aafIntensity-class text html latex
aafList-class text html latex
aafLocusLink-class text html latex
aafLocusLink text html latex example
aafPathway-class text html latex
aafPathway text html latex example
aafPathwayItem-class text html latex
aafProbe-class text html latex
aafProbe text html latex example
aafPubMed-class text html latex
aafPubMed text html latex example
aafSearchGO text html latex
aafSearchText text html latex example
aafSigned-class text html latex
aafSymbol-class text html latex
aafSymbol text html latex example
aafTable-class text html latex
aafTable text html latex
aafTableAnn text html latex
aafTableFrame text html latex
aafTableInt text html latex
aafUniGene-class text html latex
aafUniGene text html latex example
chkPkgs text html latex
getCSS-methods text html latex
getHTML-methods text html latex
getTD-methods text html latex
getText-methods text html latex
getURL-methods text html latex
is.annpkg text html latex example
selectorWidget text html latex
** building package indices ...
* DONE (annaffy)