Ringo 1.6.0
J. Toedling
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Ringo | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/Ringo.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'Ringo/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Ringo' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Ringo' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Ringo-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Ringo-manual.tex ... OK
* checking Ringo-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/Ringo.Rcheck
---------- Making package Ringo ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making region_overlap.d from region_overlap.c
making ringo_init.d from ringo_init.c
making mmeansd.d from mmeansd.cpp
making mmedian.d from mmedian.cpp
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c region_overlap.c -o region_overlap.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c ringo_init.c -o ringo_init.o
g++ -Ie:/biocbld/bbs-2.3-bioc/R/include -O2 -Wall -c mmeansd.cpp -o mmeansd.o
g++ -Ie:/biocbld/bbs-2.3-bioc/R/include -O2 -Wall -c mmedian.cpp -o mmedian.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i Ringo_res.rc -o Ringo_res.o
g++ -shared -s -o Ringo.dll Ringo.def region_overlap.o ringo_init.o mmeansd.o mmedian.o Ringo_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package Ringo for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Attaching package: 'geneplotter'
The following object(s) are masked from package:lattice :
panel.smoothScatter
Loading required package: limma
Loading required package: vsn
Loading required package: affy
Loading required package: RColorBrewer
Loading required package: SparseM
Attaching package: 'SparseM'
The following object(s) are masked from package:stats :
model.response
The following object(s) are masked from package:base :
backsolve,
chol
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'Ringo'
Formats: text html latex example chm
Ringo-internal text html latex chm
arrayImage text html latex example chm
asExprSet text html latex example chm
autocorr text html latex example chm
cherByThreshold text html latex example chm
cherClass text html latex example chm
chipAlongChrom text html latex example chm
computeRunningMedians text html latex example chm
compute_gc text html latex example chm
compute_sliding_t text html latex example chm
corrPlot text html latex example chm
extractProbeAnno text html latex chm
features2Probes text html latex example chm
findChersOnSmoothed text html latex example chm
ftr2xys text html latex example chm
getFeats text html latex chm
newCER text html latex example chm
nimblegenNorm text html latex chm
plotAutocorr text html latex example chm
plot_cher text html latex chm
posToProbeAnnoEnvironment text html latex example chm
preprocess text html latex example chm
probeAnnoClass text html latex example chm
readNimblegen text html latex example chm
regionoverlap text html latex example chm
relateCERs text html latex example chm
sliding_meansd text html latex example chm
sliding_quantile text html latex example chm
upperBoundNull text html latex example chm
validProbeAnno text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\Ringo.Rcheck\00_pkg_src\Ringo\chm\Ringo.chm
Compile time: 0 minutes, 0 seconds
31 Topics
132 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\Ringo.Rcheck\00_pkg_src\Ringo\chm\Ringo.chm, 68,038 bytes
Compression decreased file by 78,806 bytes.
adding MD5 sums
* DONE (Ringo)