DEDS 1.16.0
Yuanyuan Xiao
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/DEDS | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/DEDS.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'DEDS/DESCRIPTION' ... OK
* this is package 'DEDS' version '1.16.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DEDS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating DEDS-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating DEDS-manual.tex ... OK
* checking DEDS-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/DEDS.Rcheck
---------- Making package DEDS ------------
adding build stamp to DESCRIPTION
making DLL ...
making deds.d from deds.c
making distance.d from distance.c
making input.d from input.c
making manip.d from manip.c
making random.d from random.c
making sampling.d from sampling.c
making stat_fun.d from stat_fun.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c deds.c -o deds.o
deds.c: In function 'type2stat':
deds.c:451: warning: 'test' may be used uninitialized in this function
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c distance.c -o distance.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c input.c -o input.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c manip.c -o manip.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c random.c -o random.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c sampling.c -o sampling.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c stat_fun.c -o stat_fun.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i DEDS_res.rc -o DEDS_res.o
gcc -std=gnu99 -shared -s -o DEDS.dll DEDS.def deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o DEDS_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package DEDS for lazy loading
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'DEDS'
Formats: text html latex example chm
ApoA1 text html latex chm
DEDS-internal text html latex chm
affySpikeIn text html latex chm
aggregateFun text html latex example chm
comp.B text html latex example chm
comp.F text html latex example chm
comp.FC text html latex example chm
comp.SAM text html latex example chm
comp.adjp text html latex example chm
Note: unmatched right brace in file 'comp.ebayes.Rd' on or after line 38
Note: unmatched right brace in file 'comp.ebayes.Rd' on or after line 38
comp.ebayes text html latex example chm
Note: removing empty section \details in file 'comp.fdr.Rd'
Note: removing empty section \details in file 'comp.fdr.Rd'
comp.fdr text html latex example chm
comp.modF text html latex example chm
comp.modt text html latex example chm
comp.stat text html latex example chm
comp.t text html latex example chm
comp.unadjp text html latex example chm
deds.chooseTest text html latex example chm
deds.class text html latex chm
deds.genExtra text html latex example chm
Note: removing empty section \examples in file 'deds.pval.Rd'
Note: removing empty section \examples in file 'deds.pval.Rd'
deds.pval text html latex chm
deds.stat text html latex example chm
deds.stat.linkC text html latex example chm
Note: removing empty section \examples in file 'hist.DEDS.Rd'
Note: removing empty section \examples in file 'hist.DEDS.Rd'
hist.DEDS text html latex chm
pairs.DEDS text html latex example chm
qqnorm.DEDS text html latex example chm
topgenes text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\DEDS.Rcheck\00_pkg_src\DEDS\chm\DEDS.chm
Compile time: 0 minutes, 1 second
27 Topics
195 Local links
1 Internet link
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\DEDS.Rcheck\00_pkg_src\DEDS\chm\DEDS.chm, 57,177 bytes
Compression decreased file by 74,591 bytes.
adding MD5 sums
* DONE (DEDS)