AffyCompatible 1.2.0
Martin Morgan
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/AffyCompatible | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ WARNINGS ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/AffyCompatible.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'AffyCompatible/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AffyCompatible' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AffyCompatible' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
xmlValue:
function(x, ignoreComments, recursive)
xmlValue.XMLAttributeValue:
function(x, ignoreComments)
xmlValue:
function(x, ignoreComments, recursive)
xmlValue.XMLAttributeValue:
function(x, ignoreComments)
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating AffyCompatible-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating AffyCompatible-manual.tex ... OK
* checking AffyCompatible-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
/Users/biocbuild/bbs-2.3-bioc/meat/AffyCompatible.Rcheck/00check.log
for details
* Installing *source* package 'AffyCompatible' ...
** R
** inst
** preparing package for lazy loading
Loading required package: XML
Loading required package: RCurl
** help
>>> Building/Updating help pages for package 'AffyCompatible'
Formats: text html latex example
AffyCompatible-class text html latex example
AffyCompatible-package text html latex
NetAffxResource-class text html latex example
NetAffxResource text html latex
accessors-NetAffxResource text html latex
readArr text html latex example
readMage text html latex example
readNetAffx text html latex example
readXml text html latex example
xclass text html latex example
zzz-.TypedAssociation-class text html latex
zzz-ARRCompatibility-class text html latex example
zzz-DTTCompatibility-class text html latex example
zzz-NetAffxCompatibility-class text html latex example
zzz text html latex
** building package indices ...
* DONE (AffyCompatible)