xcms 1.14.1
Colin A. Smith
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/xcms | | Last Changed Rev: 36077 / Revision: 38965 | | Last Changed Date: 2008-12-17 07:40:02 -0800 (Wed, 17 Dec 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for file 'xcms/DESCRIPTION' ... OK
* preparing 'xcms':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst564425650
---------- Making package xcms ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making mzClust_hclust.d from mzClust_hclust.c
making mzROI.d from mzROI.c
making netCDF.d from netCDF.c
making util.d from util.c
making xcms.d from xcms.c
making ramp.d from ramp.cpp
making rampR.d from rampR.cpp
making ramp_base64.d from ramp_base64.cpp
gcc -std=gnu99 -I./win -D_MSC_VER -DWIN32_LEAN_AND_MEAN -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c mzClust_hclust.c -o mzClust_hclust.o
gcc -std=gnu99 -I./win -D_MSC_VER -DWIN32_LEAN_AND_MEAN -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c mzROI.c -o mzROI.o
gcc -std=gnu99 -I./win -D_MSC_VER -DWIN32_LEAN_AND_MEAN -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c netCDF.c -o netCDF.o
gcc -std=gnu99 -I./win -D_MSC_VER -DWIN32_LEAN_AND_MEAN -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c util.c -o util.o
gcc -std=gnu99 -I./win -D_MSC_VER -DWIN32_LEAN_AND_MEAN -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c xcms.c -o xcms.o
g++ -I./win -D_MSC_VER -DWIN32_LEAN_AND_MEAN -Ie:/biocbld/bbs-2.3-bioc/R/include -O2 -Wall -c ramp.cpp -o ramp.o
ramp.cpp:64:1: warning: "S_ISDIR" redefined
In file included from ramp.h:59,
from ramp.cpp:34:
c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/../../../../include/sys/stat.h:68:1: warning: this is the location of the previous definition
g++ -I./win -D_MSC_VER -DWIN32_LEAN_AND_MEAN -Ie:/biocbld/bbs-2.3-bioc/R/include -O2 -Wall -c rampR.cpp -o rampR.o
g++ -I./win -D_MSC_VER -DWIN32_LEAN_AND_MEAN -Ie:/biocbld/bbs-2.3-bioc/R/include -O2 -Wall -c ramp_base64.cpp -o ramp_base64.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i xcms_res.rc -o xcms_res.o
g++ -shared -s -o xcms.dll xcms.def mzClust_hclust.o mzROI.o netCDF.o util.o xcms.o ramp.o rampR.o ramp_base64.o xcms_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -L./win -lws2_32 -lnetcdf -lz -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package xcms for lazy loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'xcms'
Formats: text html latex example chm
SSgauss text html latex chm
c.xcmsSet text html latex chm
calibrate text html latex chm
colMax text html latex chm
Note: removing empty section \seealso in file 'collect-methods.Rd'
Note: removing empty section \seealso in file 'collect-methods.Rd'
collect-methods text html latex chm
descendZero text html latex example chm
diffreport-methods text html latex chm
doubleMatrix text html latex chm
etg text html latex chm
fillPeaks-methods text html latex chm
filtfft text html latex chm
findEqualGreater text html latex chm
findPeaks-methods text html latex chm
findPeaks.MS1-methods text html latex chm
findPeaks.MSW-methods text html latex chm
findPeaks.centWave-methods text html latex chm
findPeaks.matchedFilter-methods text html latex chm
getEIC-methods text html latex chm
getPeaks-methods text html latex chm
getScan-methods text html latex chm
getSpec-methods text html latex chm
group-methods text html latex chm
group.density text html latex chm
group.mzClust text html latex example chm
groupnames-methods text html latex chm
groupval-methods text html latex chm
image.xcmsRaw text html latex chm
medianFilter text html latex example chm
na.flatfill text html latex chm
netCDF text html latex chm
panel.cor text html latex chm
plot.xcmsEIC text html latex chm
plotChrom-methods text html latex chm
plotPeaks-methods text html latex chm
plotRaw-methods text html latex chm
plotScan-methods text html latex chm
plotSpec-methods text html latex chm
plotSurf-methods text html latex chm
plotTIC-methods text html latex chm
plotrt-methods text html latex chm
profGenerate text html latex chm
profMedFilt-methods text html latex chm
profMethod-methods text html latex chm
profRange-methods text html latex chm
profStep-methods text html latex chm
pval text html latex chm
ramp text html latex chm
rawEIC-methods text html latex chm
rectUnique text html latex example chm
retcor-methods text html latex chm
retexp text html latex chm
sampnames-methods text html latex chm
score_fun text html latex chm
searchMetlin text html latex chm
simSearch text html latex chm
specNoise text html latex chm
specPeaks text html latex chm
Note: removing empty section \usage in file 'split.xcmsSet.Rd'
Note: removing empty section \usage in file 'split.xcmsSet.Rd'
split.xcmsSet text html latex chm
write.cdf-methods text html latex chm
xcmsEIC-class text html latex chm
xcmsFragments-class text html latex chm
xcmsFragments text html latex chm
xcmsPapply text html latex example chm
xcmsRaw-class text html latex chm
Note: removing empty section \note in file 'xcmsRaw.Rd'
Note: removing empty section \note in file 'xcmsRaw.Rd'
xcmsRaw text html latex chm
xcmsSet-class text html latex chm
Note: removing empty section \note in file 'xcmsSet.Rd'
Note: removing empty section \note in file 'xcmsSet.Rd'
xcmsSet text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\xcms\chm\xcms.chm
Compile time: 0 minutes, 2 seconds
68 Topics
347 Local links
17 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\xcms\chm\xcms.chm, 96,665 bytes
Compression decreased file by 160,881 bytes.
adding MD5 sums
* DONE (xcms)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'xcms_1.14.1.tar.gz'