reb 1.16.0
Karl J. Dykema
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/reb | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | [ OK ] | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for file 'reb/DESCRIPTION' ... OK
* preparing 'reb':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'reb' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c movbin.c -o movbin.o
movbin.c: In function ‘bcount’:
movbin.c:37: warning: suggest parentheses around comparison in operand of &
movbin.c: In function ‘bscore’:
movbin.c:48: warning: implicit declaration of function ‘sqrt’
movbin.c:48: warning: incompatible implicit declaration of built-in function ‘sqrt’
movbin.c: In function ‘mean’:
movbin.c:63: warning: suggest parentheses around comparison in operand of &
movbin.c: In function ‘mspan_mov_binom_mx’:
movbin.c:128: warning: unused variable ‘im_mx’
movbin.c: In function ‘mspan_mov_binom’:
movbin.c:145: warning: unused variable ‘c’
movbin.c:145: warning: unused variable ‘r’
movbin.c: In function ‘main’:
movbin.c:168: warning: unused variable ‘nr’
movbin.c:166: warning: unused variable ‘rlen’
movbin.c:163: warning: unused variable ‘range’
movbin.c:162: warning: unused variable ‘sum_mx’
movbin.c:162: warning: unused variable ‘sum_vec’
movbin.c:161: warning: unused variable ‘im_mx’
movbin.c:161: warning: unused variable ‘im_vec’
movbin.c:160: warning: unused variable ‘gx2’
movbin.c:158: warning: unused variable ‘data’
gcc -std=gnu99 -shared -L/usr/local/lib64 -o reb.so movbin.o -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: idiogram
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
Loading required package: plotrix
Warning in namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: .rwb
Warning in namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: .usedChromExprs
Warning in namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: idiogram
** help
>>> Building/Updating help pages for package 'reb'
Formats: text html latex example
Hs.arms text html latex
absMax text html latex example
buildChromCytoband text html latex example
buildChromMap text html latex example
cset2band text html latex example
fromRevIsh text html latex example
Note: removing empty section \value in file 'isAbnormal.Rd'
isAbnormal text html latex example
mcr.eset text html latex example
Note: removing empty section \note in file 'movbin.Rd'
movbin text html latex example
movt text html latex example
naMean text html latex example
Note: unmatched right brace in file 'regmap.Rd' on or after line 15
Note: removing empty section \value in file 'regmap.Rd'
Note: removing empty section \note in file 'regmap.Rd'
Note: removing empty section \references in file 'regmap.Rd'
regmap text html latex example
revish text html latex example
rmAmbigMappings text html latex example
smoothByRegion text html latex example
Note: removing empty section \note in file 'summarizeByRegion.Rd'
summarizeByRegion text html latex example
tBinomTest text html latex example
writeGFF3 text html latex example
** building package indices ...
* DONE (reb)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'reb_1.16.0.tar.gz'