matchprobes 1.14.1
Biocore Team c/o BioC user list
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/matchprobes | | Last Changed Rev: 36118 / Revision: 38965 | | Last Changed Date: 2008-12-17 19:53:35 -0800 (Wed, 17 Dec 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/matchprobes.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'matchprobes/DESCRIPTION' ... OK
* this is package 'matchprobes' version '1.14.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'matchprobes' can be installed ... WARNING
Found the following significant warnings:
WARNING: found \itemize inside \value in file 'getProbeDataAffy.Rd'
WARNING: found \itemize inside \value in file 'getProbeDataAffy.Rd'
WARNING: found \itemize inside \value in file 'getProbeData_1lq.Rd'
WARNING: found \itemize inside \value in file 'getProbeData_1lq.Rd'
See 'E:/biocbld/bbs-2.3-bioc/meat/matchprobes.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating matchprobes-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating matchprobes-manual.tex ... OK
* checking matchprobes-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.3-bioc/meat/matchprobes.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/matchprobes.Rcheck
---------- Making package matchprobes ------------
adding build stamp to DESCRIPTION
making DLL ...
making matchprobes.d from matchprobes.c
making strutils.d from strutils.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c matchprobes.c -o matchprobes.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c strutils.c -o strutils.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i matchprobes_res.rc -o matchprobes_res.o
gcc -std=gnu99 -shared -s -o matchprobes.dll matchprobes.def matchprobes.o strutils.o matchprobes_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package matchprobes for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'matchprobes'
Formats: text html latex example chm
basecontent text html latex example chm
combineAffyBatch text html latex example chm
complementSeq text html latex example chm
WARNING: found \itemize inside \value in file 'getProbeDataAffy.Rd'
WARNING: found \itemize inside \value in file 'getProbeDataAffy.Rd'
getProbeDataAffy text html latex example chm
WARNING: found \itemize inside \value in file 'getProbeData_1lq.Rd'
WARNING: found \itemize inside \value in file 'getProbeData_1lq.Rd'
getProbeData_1lq text html latex example chm
longestConsecutive text html latex example chm
makeProbePackage text html latex example chm
matchprobes text html latex example chm
print.probetable text html latex example chm
reverseSeq text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\matchprobes.Rcheck\00_pkg_src\matchprobes\chm\matchprobes.chm
Compile time: 0 minutes, 0 seconds
11 Topics
37 Local links
1 Internet link
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\matchprobes.Rcheck\00_pkg_src\matchprobes\chm\matchprobes.chm, 30,538 bytes
Compression decreased file by 9,594 bytes.
adding MD5 sums
* DONE (matchprobes)