maDB 1.14.1
Johannes Rainer
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/maDB | | Last Changed Rev: 35895 / Revision: 38965 | | Last Changed Date: 2008-12-12 01:59:33 -0800 (Fri, 12 Dec 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | [ OK ] |
INSTALLATION WITH 'R CMD INSTALL --library=maDB.buildbin-libdir maDB_1.14.1.tar.gz'
* Installing *source* package 'maDB' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: pgUtils
Loading required package: Rdbi
Loading required package: RdbiPgSQL
Loading required package: limma
Creating a new generic function for "sort" in "maDB"
** help
>>> Building/Updating help pages for package 'maDB'
Formats: text html latex example
Note: removing empty section \note in file 'EexprSet-class.Rd'
Note: removing empty section \examples in file 'EexprSet-class.Rd'
EexprSet-class text html latex
Note: removing empty section \references in file 'Layout-class.Rd'
Note: removing empty section \examples in file 'Layout-class.Rd'
Layout-class text html latex
Note: removing empty section \references in file 'MAtoG.Rd'
Note: removing empty section \examples in file 'MAtoG.Rd'
MAtoG text html latex
Note: removing empty section \references in file 'MAtoR.Rd'
Note: removing empty section \examples in file 'MAtoR.Rd'
MAtoR text html latex
Note: removing empty section \examples in file 'MadbSet-class.Rd'
MadbSet-class text html latex
Note: removing empty section \references in file 'Sample-class.Rd'
Note: removing empty section \examples in file 'Sample-class.Rd'
Sample-class text html latex
Note: removing empty section \references in file 'SignalChannel-class.Rd'
Note: removing empty section \examples in file 'SignalChannel-class.Rd'
SignalChannel-class text html latex
Similarity-class text html latex
Note: removing empty section \references in file 'arrowProgress.Rd'
arrowProgress text html latex example
Note: removing empty section \references in file 'average.Rd'
average text html latex
Note: removing empty section \references in file 'calculateSimilarity.Rd'
calculateSimilarity text html latex example
Note: removing empty section \references in file 'checkForAnnotation.Rd'
Note: removing empty section \examples in file 'checkForAnnotation.Rd'
checkForAnnotation text html latex
Note: removing empty section \references in file 'createDirs.Rd'
Note: removing empty section \examples in file 'createDirs.Rd'
createDirs text html latex
Note: removing empty section \references in file 'createEexprSetFromLimma.Rd'
Note: removing empty section \examples in file 'createEexprSetFromLimma.Rd'
createEexprSetFromLimma text html latex
Note: removing empty section \references in file 'createFile.Rd'
Note: removing empty section \examples in file 'createFile.Rd'
createFile text html latex
createJOINQuery text html latex example
Note: removing empty section \references in file 'createSampleFromTable.Rd'
Note: removing empty section \examples in file 'createSampleFromTable.Rd'
createSampleFromTable text html latex
Note: removing empty section \references in file 'dbCalculateRegulations.Rd'
dbCalculateRegulations text html latex
dbGetComparisons text html latex
dbGetGeneRegulationRanking text html latex
Note: removing empty section \references in file 'dbSearchSimilarPattern.Rd'
Note: removing empty section \examples in file 'dbSearchSimilarPattern.Rd'
dbSearchSimilarPattern text html latex
Note: removing empty section \references in file 'deleteExperimentFromDB.Rd'
deleteExperimentFromDB text html latex
Note: removing empty section \references in file 'distance.euclidian.Rd'
Note: removing empty section \examples in file 'distance.euclidian.Rd'
distance.euclidian text html latex
Note: removing empty section \references in file 'distance.pearson.Rd'
Note: removing empty section \examples in file 'distance.pearson.Rd'
distance.pearson text html latex
Note: removing empty section \references in file 'distance.pearson.uncentered.Rd'
Note: removing empty section \examples in file 'distance.pearson.uncentered.Rd'
distance.pearson.uncentered text html latex
Note: removing empty section \references in file 'distance.spearman.Rd'
Note: removing empty section \examples in file 'distance.spearman.Rd'
distance.spearman text html latex
drawMAPlot text html latex
Note: removing empty section \references in file 'drawVolcanoPlot.Rd'
drawVolcanoPlot text html latex
Note: removing empty section \references in file 'format.latex.Rd'
Note: removing empty section \seealso in file 'format.latex.Rd'
Note: removing empty section \examples in file 'format.latex.Rd'
format.latex text html latex
getAnnotation text html latex
Note: removing empty section \references in file 'getDBAnnotation.Rd'
getDBAnnotation text html latex
Note: removing empty section \references in file 'getExpValue.Rd'
getExpValue text html latex
Note: removing empty section \references in file 'getExperimentDBInfo.Rd'
getExperimentDBInfo text html latex
Note: removing empty section \details in file 'getMDB.Rd'
Note: removing empty section \references in file 'getMDB.Rd'
getMDB text html latex
Note: removing empty section \examples in file 'getPK.Rd'
getPK text html latex
Note: removing empty section \details in file 'getPathFromFile.Rd'
Note: removing empty section \references in file 'getPathFromFile.Rd'
getPathFromFile text html latex example
Note: removing empty section \references in file 'getSamplesFromDB.Rd'
getSamplesFromDB text html latex
Note: removing empty section \references in file 'isDecimal.Rd'
Note: removing empty section \seealso in file 'isDecimal.Rd'
isDecimal text html latex example
loadFromDB text html latex
maDB-package text html latex
Note: removing empty section \references in file 'mapply.Rd'
mapply text html latex example
Note: removing empty section \references in file 'mean.center.Rd'
mean.center text html latex example
Note: removing empty section \references in file 'meanWithoutNA.Rd'
meanWithoutNA text html latex example
Note: removing empty section \references in file 'medianWithoutNA.Rd'
medianWithoutNA text html latex example
Note: removing empty section \references in file 'multiGrep.Rd'
multiGrep text html latex example
Note: removing empty section \references in file 'myGrep.Rd'
Note: removing empty section \examples in file 'myGrep.Rd'
myGrep text html latex
newMadbSet text html latex
openMadbVignette text html latex
plotSimilarity text html latex
Note: removing empty section \references in file 'progress.Rd'
progress text html latex example
Note: removing empty section \details in file 'publishToDB.Rd'
Note: removing empty section \references in file 'publishToDB.Rd'
Note: removing empty section \examples in file 'publishToDB.Rd'
publishToDB text html latex
Note: removing empty section \references in file 'replaceAll.Rd'
replaceAll text html latex example
Note: removing empty section \references in file 'replaces.Rd'
replaces text html latex example
smallALL text html latex
toEexprSet text html latex
Note: removing empty section \references in file 'updateDBAnnotation.Rd'
updateDBAnnotation text html latex
Note: removing empty section \references in file 'writeFigure.Rd'
Note: removing empty section \examples in file 'writeFigure.Rd'
writeFigure text html latex
Note: removing empty section \references in file 'writeLatexTable.Rd'
Note: removing empty section \examples in file 'writeLatexTable.Rd'
writeLatexTable text html latex
** building package indices ...
* DONE (maDB)