Package: flowUtils

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes flowUtils_1.2.0.tar.gz

StartedAt: 2009-04-18 17:22:38 -0700 (Sat, 18 Apr 2009)

EndedAt: 2009-04-18 17:24:02 -0700 (Sat, 18 Apr 2009)

EllapsedTime: 83.4 seconds

RetCode: 0

Status: OK

CheckDir: flowUtils.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/flowUtils.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'flowUtils/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowUtils' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowUtils' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating flowUtils-Ex.R ... OK
* checking examples ... OK
* creating flowUtils-manual.tex ... OK
* checking flowUtils-manual.tex using pdflatex ... OK

* Installing *source* package 'flowUtils' ...
** R
** inst
** preparing package for lazy loading
Loading required package: flowCore
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 0.5-01)
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: rpanel
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Package `rpanel', version 1.0-5
type help(rpanel) for summary information
Loading required package: ks
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter 

Loading required package: XML
** help
 >>> Building/Updating help pages for package 'flowUtils'
     Formats: text html latex example 
  flowUtil-package                  text    html    latex
  read.gatingML                     text    html    latex   example
  testGatingCompliance              text    html    latex   example
** building package indices ...
* DONE (flowUtils)