edgeR 1.0.4
Mark Robinson
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/edgeR | | Last Changed Rev: 37682 / Revision: 38965 | | Last Changed Date: 2009-03-02 22:42:43 -0800 (Mon, 02 Mar 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/edgeR.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'edgeR/DESCRIPTION' ... OK
* this is package 'edgeR' version '1.0.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'edgeR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating edgeR-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/e/biocbld/bbs-2.3-bioc/meat/edgeR.Rcheck/tests'
Running 'mseq-Tests.R'
make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-2.3-bioc/meat/edgeR.Rcheck/tests'
OK
* checking package vignettes in 'inst/doc' ... OK
* creating edgeR-manual.tex ... OK
* checking edgeR-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/edgeR.Rcheck
---------- Making package edgeR ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package edgeR for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'edgeR'
Formats: text html latex example chm
DGEList text html latex chm
EBList text html latex chm
alpha.approxeb text html latex example chm
approx.expected.info text html latex example chm
condLogLikDerDelta text html latex example chm
condLogLikDerSize text html latex example chm
deDGE text html latex example chm
deDGEList text html latex chm
estimatePs text html latex example chm
exactTestNB text html latex example chm
findMaxD2 text html latex example chm
getData text html latex example chm
interpolateHelper text html latex example chm
logLikDerP text html latex example chm
plotMA text html latex example chm
quantileAdjust text html latex example chm
readDGE text html latex example chm
tau2.0.objective text html latex example chm
topTags text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\edgeR.Rcheck\00_pkg_src\edgeR\chm\edgeR.chm
Compile time: 0 minutes, 0 seconds
20 Topics
43 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\edgeR.Rcheck\00_pkg_src\edgeR\chm\edgeR.chm, 32,792 bytes
Compression decreased file by 21,526 bytes.
adding MD5 sums
* DONE (edgeR)