Package: arrayQualityMetrics

Version: 1.8.1

Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD build arrayQualityMetrics

StartedAt: 2009-04-18 15:10:03 -0700 (Sat, 18 Apr 2009)

EndedAt: 2009-04-18 15:10:36 -0700 (Sat, 18 Apr 2009)

EllapsedTime: 32.8 seconds

RetCode: 0

Status: OK

PackageFile: arrayQualityMetrics_1.8.1.tar.gz

PackageFileSize: 224.9 KiB

* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* preparing 'arrayQualityMetrics':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'arrayQualityMetrics' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'geneplotter'


	The following object(s) are masked from package:lattice :

	 panel.smoothScatter 

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: vsn
Loading required package: affy
Loading required package: limma
Loading required package: RColorBrewer
Loading required package: affyPLM
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: preprocessCore
Loading required package: simpleaffy
Loading required package: latticeExtra
Loading required package: grid
Loading required package: beadarray
Loading required package: hwriter
Loading required package: sma

Attaching package: 'beadarray'


	The following object(s) are masked from package:limma :

	 backgroundCorrect,
	 imageplot,
	 plotMA 

Loading required package: marray

Attaching package: 'marray'


	The following object(s) are masked from package:sma :

	 cor.na,
	 length.na,
	 log.na,
	 mean.na,
	 order.na,
	 prod.na,
	 quantile.na,
	 scale.na,
	 stat.gnames,
	 sum.na,
	 var.na 

** help
 >>> Building/Updating help pages for package 'arrayQualityMetrics'
     Formats: text html latex example 
  XYfromGAL                         text    html    latex
  arrayQualityMetrics               text    html    latex   example
** building package indices ...
* DONE (arrayQualityMetrics)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'arrayQualityMetrics_1.8.1.tar.gz'