VanillaICE 1.4.0
Robert Scharpf
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/VanillaICE | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for file 'VanillaICE/DESCRIPTION' ... OK
* preparing 'VanillaICE':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst339634906
---------- Making package VanillaICE ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making viterbi.d from viterbi.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c viterbi.c -o viterbi.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i VanillaICE_res.rc -o VanillaICE_res.o
gcc -std=gnu99 -shared -s -o VanillaICE.dll VanillaICE.def viterbi.o VanillaICE_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lm -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package VanillaICE for lazy loading
Loading required package: SNPchip
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: oligoClasses
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'VanillaICE'
Formats: text html latex example chm
HmmOptions-class text html latex example chm
HmmOptions-methods text html latex chm
HmmParameter-class text html latex example chm
HmmPredict-class text html latex example chm
addFeatureData text html latex chm
calculateBreakpoints text html latex chm
calculateCnSE text html latex chm
calculateDistance text html latex chm
calls.ICE text html latex chm
calls.emission text html latex chm
chromosome1 text html latex example chm
copyNumber.ICE text html latex chm
copyNumber.emission text html latex chm
Note: removing empty section \details in file 'copynumberEmission.Rd'
Note: removing empty section \seealso in file 'copynumberEmission.Rd'
Note: removing empty section \examples in file 'copynumberEmission.Rd'
Note: removing empty section \details in file 'copynumberEmission.Rd'
Note: removing empty section \seealso in file 'copynumberEmission.Rd'
Note: removing empty section \examples in file 'copynumberEmission.Rd'
copynumberEmission text html latex chm
emission text html latex chm
Note: removing empty section \details in file 'findBreaks.Rd'
Note: removing empty section \examples in file 'findBreaks.Rd'
Note: removing empty section \details in file 'findBreaks.Rd'
Note: removing empty section \examples in file 'findBreaks.Rd'
findBreaks text html latex chm
fit text html latex example chm
genomicDistance text html latex chm
genotypeEmission text html latex chm
getChromosomeArm text html latex chm
hmm text html latex example chm
pi text html latex chm
Note: removing empty section \details in file 'scaleTransitionProbability.Rd'
Note: removing empty section \examples in file 'scaleTransitionProbability.Rd'
Note: removing empty section \details in file 'scaleTransitionProbability.Rd'
Note: removing empty section \examples in file 'scaleTransitionProbability.Rd'
scaleTransitionProbability text html latex chm
states text html latex chm
transitionScale text html latex chm
viterbi text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\VanillaICE\chm\VanillaICE.chm
Compile time: 0 minutes, 1 second
27 Topics
141 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\VanillaICE\chm\VanillaICE.chm, 39,615 bytes
Compression decreased file by 58,949 bytes.
adding MD5 sums
* DONE (VanillaICE)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'VanillaICE_1.4.0.tar.gz'