Rdisop 1.2.0
Steffen Neumann
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Rdisop | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.6) / i386 | N O T S U P P O R T E D |
* checking for file 'Rdisop/DESCRIPTION' ... OK
* preparing 'Rdisop':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst492873767
---------- Making package Rdisop ------------
Building libRcpp.a in RcppSrc...
g++ -c Rcpp.cpp -o Rcpp.o -I"e:\biocbld\bbs-2.3-bioc\R/include" -I"e:\biocbld\bbs-2.3-bioc\R/src/include" -Wall -O2
ar r libRcpp.a Rcpp.o
c:\Rtools\MinGW\bin\ar.exe: creating libRcpp.a
ranlib libRcpp.a
rm Rcpp.o
Building imslib.dll in src/imslib...
ls: cannot access src/win/libims*.dll: No such file or directory
total 5488
-rw-r--r-- 1 biocbuild None 2806048 Apr 18 17:24 libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 Apr 18 17:24 libims.dll
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making disop.d from disop.cpp
g++ -Ie:/biocbld/bbs-2.3-bioc/R/include -I./imslib/src -I../RcppSrc/ -O2 -Wall -c disop.cpp -o disop.o
disop.cpp: In function 'bool isValidMyNitrogenRule(const ims::ComposedElement&, int)':
disop.cpp:122: warning: unused variable 'parityeven'
disop.cpp: In function 'SEXPREC* decomposeIsotopes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:207: warning: comparison between signed and unsigned integer expressions
disop.cpp:210: warning: comparison between signed and unsigned integer expressions
disop.cpp:218: warning: comparison between signed and unsigned integer expressions
disop.cpp:218: warning: comparison between signed and unsigned integer expressions
disop.cpp:171: warning: unused variable 'number_molecules_shown'
disop.cpp: In function 'SEXPREC* calculateScore(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:353: warning: comparison between signed and unsigned integer expressions
disop.cpp:353: warning: comparison between signed and unsigned integer expressions
disop.cpp:370: warning: comparison between signed and unsigned integer expressions
disop.cpp:373: warning: comparison between signed and unsigned integer expressions
disop.cpp:377: warning: comparison between signed and unsigned integer expressions
disop.cpp:377: warning: comparison between signed and unsigned integer expressions
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&)':
disop.cpp:789: warning: deprecated conversion from string constant to 'char*'
disop.cpp:791: warning: deprecated conversion from string constant to 'char*'
disop.cpp:793: warning: deprecated conversion from string constant to 'char*'
disop.cpp:795: warning: deprecated conversion from string constant to 'char*'
disop.cpp:796: warning: deprecated conversion from string constant to 'char*'
disop.cpp:797: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i Rdisop_res.rc -o Rdisop_res.o
g++ -shared -s -o Rdisop.dll Rdisop.def disop.o Rdisop_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -L./winlibs -lims -L../RcppSrc/ -lRcpp -lR
Info: resolving ims::IsotopeDistribution::SIZE by linking to __imp___ZN3ims19IsotopeDistribution4SIZEE (auto-import)
Info: resolving ims::IsotopeDistribution::ABUNDANCES_SUM_ERROR by linking to __imp___ZN3ims19IsotopeDistribution20ABUNDANCES_SUM_ERRORE (auto-import)
Info: resolving vtable for ims::Alphabetby linking to __imp___ZTVN3ims8AlphabetE (auto-importc:/rtools/mingw/bin/../lib/gcc/mingw32/4.2.1-sjlj/../../../../mingw32/bin/ld.exe: warning: auto-importing has been activated without --enable-auto-import specified on the command line.
This should work unless it involves constant data structures referencing symbols from auto-imported DLLs.)
... DLL made
installing DLL
installing R files
installing inst files
preparing package Rdisop for lazy loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'Rdisop'
Formats: text html latex example chm
RcppVersion text html latex example chm
addMolecules text html latex example chm
decomposeMass text html latex example chm
getMolecule text html latex example chm
initializeCHNOPS text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\Rdisop\chm\Rdisop.chm
Compile time: 0 minutes, 0 seconds
6 Topics
25 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\Rdisop\chm\Rdisop.chm, 21,361 bytes
Compression decreased file by 2,124 bytes.
adding MD5 sums
* DONE (Rdisop)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Rdisop_1.2.0.tar.gz'