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Package 141/294HostnameOS / ArchBUILDCHECKBUILD BIN
ITALICS 2.2.0
Guillem Rigaill
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ITALICS
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: ITALICS
Version: 2.2.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build ITALICS
StartedAt: 2009-04-18 17:39:01 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:39:42 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 41.5 seconds
RetCode: 0
Status: OK
PackageFile: ITALICS_2.2.0.tar.gz
PackageFileSize: 377 KiB

Command output

* checking for file 'ITALICS/DESCRIPTION' ... OK
* preparing 'ITALICS':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst592048043


---------- Making package ITALICS ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package ITALICS for lazy loading
Loading required package: GLAD
Loading required package: ITALICSData
Loading required package: oligo
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: preprocessCore
Loading required package: AnnotationDbi
Loading required package: affxparser
Loading required package: oligoClasses
oligo Package - Series 1.5.x
Loading required package: pd.mapping50k.xba240
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'ITALICS'
     Formats: text html latex example chm 
Note: ignoring empty \keyword entries in file 'GLAD.GLAD.Rd'
Note: ignoring empty \keyword entries in file 'GLAD.GLAD.Rd'
  GLAD.GLAD                         text    html    latex           chm
Note: ignoring empty \keyword entries in file 'ITALICSNew.Rd'
Note: ignoring empty \keyword entries in file 'ITALICSNew.Rd'
  ITALICSNew                        text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'ITALICSTrain.Rd'
Note: ignoring empty \keyword entries in file 'ITALICSTrain.Rd'
  ITALICSTrain                      text    html    latex           chm
Note: ignoring empty \keyword entries in file 'Model.GetConfDat.Rd'
Note: ignoring empty \keyword entries in file 'Model.GetConfDat.Rd'
  Model.GetConfDat                  text    html    latex           chm
Note: ignoring empty \keyword entries in file 'Model.GetCorrection.Rd'
Note: ignoring empty \keyword entries in file 'Model.GetCorrection.Rd'
  Model.GetCorrection               text    html    latex           chm
Note: ignoring empty \keyword entries in file 'Model.GetEffet.Rd'
Note: ignoring empty \keyword entries in file 'Model.GetEffet.Rd'
  Model.GetEffet                    text    html    latex           chm
Note: ignoring empty \keyword entries in file 'Model.GetModel.Rd'
Note: ignoring empty \keyword entries in file 'Model.GetModel.Rd'
  Model.GetModel                    text    html    latex           chm
Note: ignoring empty \keyword entries in file 'Model.GetResidu.Rd'
Note: ignoring empty \keyword entries in file 'Model.GetResidu.Rd'
  Model.GetResidu                   text    html    latex           chm
Note: ignoring empty \keyword entries in file 'New.AddInfo.Rd'
Note: ignoring empty \keyword entries in file 'New.AddInfo.Rd'
  New.AddInfo                       text    html    latex           chm
Note: ignoring empty \keyword entries in file 'New.fromQuartetToSnp.Rd'
Note: removing empty section \examples in file 'New.fromQuartetToSnp.Rd'
Note: ignoring empty \keyword entries in file 'New.fromQuartetToSnp.Rd'
Note: removing empty section \examples in file 'New.fromQuartetToSnp.Rd'
  New.fromQuartetToSnp              text    html    latex           chm
Note: ignoring empty \keyword entries in file 'New.fromSnpToQuartet.Rd'
Note: ignoring empty \keyword entries in file 'New.fromSnpToQuartet.Rd'
  New.fromSnpToQuartet              text    html    latex           chm
Note: ignoring empty \keyword entries in file 'New.getQuartet.Rd'
Note: ignoring empty \keyword entries in file 'New.getQuartet.Rd'
  New.getQuartet                    text    html    latex           chm
Note: ignoring empty \keyword entries in file 'New.getSnpInfo.Rd'
Note: ignoring empty \keyword entries in file 'New.getSnpInfo.Rd'
  New.getSnpInfo                    text    html    latex           chm
Note: ignoring empty \keyword entries in file 'New.readQuartetCopyNb.Rd'
Note: ignoring empty \keyword entries in file 'New.readQuartetCopyNb.Rd'
  New.readQuartetCopyNb             text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\ITALICS\chm\ITALICS.chm





Compile time: 0 minutes, 1 second

15	Topics

32	Local links

14	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\ITALICS\chm\ITALICS.chm, 29,084 bytes

Compression decreased file by 17,027 bytes.

  adding MD5 sums

* DONE (ITALICS)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ITALICS_2.2.0.tar.gz'