GenomeGraphs 1.2.3
Steffen Durinck
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GenomeGraphs | | Last Changed Rev: 37329 / Revision: 38965 | | Last Changed Date: 2009-02-11 18:53:22 -0800 (Wed, 11 Feb 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.2.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GenomeGraphs-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GenomeGraphs-manual.tex ... OK
* checking GenomeGraphs-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/GenomeGraphs.Rcheck
---------- Making package GenomeGraphs ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package GenomeGraphs for lazy loading
Loading required package: biomaRt
Loading required package: grid
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'GenomeGraphs'
Formats: text html latex example chm
AnnotationTrack-class text html latex example chm
BaseTrack-class text html latex example chm
DisplayPars-class text html latex example chm
DisplayPars text html latex example chm
ExonArray-class text html latex example chm
Gene-class text html latex example chm
GeneModel-class text html latex example chm
GeneRegion-class text html latex example chm
GenericArray-class text html latex example chm
GenomeAxis-class text html latex example chm
HighlightRegion-class text html latex example chm
Ideogram-class text html latex example chm
Legend-class text html latex example chm
MappedRead-class text html latex example chm
Overlay-class text html latex example chm
RectangleOverlay-class text html latex example chm
Segmentable-class text html latex example chm
Segmentation-class text html latex example chm
TextOverlay-class text html latex example chm
Title-class text html latex example chm
Transcript-class text html latex example chm
TranscriptRegion-class text html latex example chm
cn text html latex example chm
Note: removing empty section \examples in file 'drawGD.Rd'
Note: removing empty section \examples in file 'drawGD.Rd'
drawGD text html latex chm
exonProbePos text html latex example chm
gdObject-class text html latex example chm
gdPlot text html latex example chm
Note: removing empty section \examples in file 'geneBiomart.Rd'
Note: removing empty section \examples in file 'geneBiomart.Rd'
geneBiomart text html latex chm
Note: removing empty section \examples in file 'geneRegionBiomart.Rd'
Note: removing empty section \examples in file 'geneRegionBiomart.Rd'
geneRegionBiomart text html latex chm
getPar text html latex example chm
Note: removing empty section \references in file 'ideogramTab.Rd'
Note: removing empty section \references in file 'ideogramTab.Rd'
ideogramTab text html latex example chm
intensity text html latex example chm
Note: removing empty section \details in file 'makeAnnotationTrack.Rd'
Note: removing empty section \details in file 'makeAnnotationTrack.Rd'
makeAnnotationTrack text html latex example chm
makeBaseTrack text html latex example chm
makeExonArray text html latex example chm
makeGene text html latex example chm
makeGeneModel text html latex example chm
makeGeneRegion text html latex example chm
makeGenericArray text html latex example chm
makeGenomeAxis text html latex example chm
Note: removing empty section \details in file 'makeIdeogram.Rd'
Note: removing empty section \details in file 'makeIdeogram.Rd'
makeIdeogram text html latex example chm
makeLegend text html latex example chm
makeRectangleOverlay text html latex example chm
makeSegmentation text html latex example chm
makeTextOverlay text html latex example chm
makeTitle text html latex example chm
makeTranscript text html latex example chm
probestart text html latex example chm
segEnd text html latex example chm
segStart text html latex example chm
segments text html latex example chm
Note: removing empty section \source in file 'seqDataEx.Rd'
Note: removing empty section \source in file 'seqDataEx.Rd'
seqDataEx text html latex example chm
setPar text html latex example chm
showDisplayOptions text html latex example chm
unrData text html latex example chm
unrNProbes text html latex example chm
unrPositions text html latex example chm
yeastCons1 text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\GenomeGraphs.Rcheck\00_pkg_src\GenomeGraphs\chm\GenomeGraphs.chm
Compile time: 0 minutes, 0 seconds
59 Topics
202 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\GenomeGraphs.Rcheck\00_pkg_src\GenomeGraphs\chm\GenomeGraphs.chm, 61,963 bytes
Compression decreased file by 109,034 bytes.
adding MD5 sums
* DONE (GenomeGraphs)