GGBase 3.0.0
Vince Carey
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GGBase | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/GGBase.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'GGBase/DESCRIPTION' ... OK
* this is package 'GGBase' version '3.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GGBase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
snpLocs.Hs,chrnum-missing: no visible binding for global variable
'hsSnpLocs'
snpLocs.Hs,chrnum-rsid: no visible binding for global variable
'hsSnpLocs'
snpLocs.Hs,missing-rsid: no visible binding for global variable
'hsSnpLocs'
snpLocs.Hs,rsid-ANY: no visible binding for global variable 'hsSnpLocs'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating GGBase-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GGBase-manual.tex ... OK
* checking GGBase-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/GGBase.Rcheck
---------- Making package GGBase ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making glm_test.d from glm_test.c
making glm_test_R.d from glm_test_R.c
making mla.d from mla.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c glm_test.c -o glm_test.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c glm_test_R.c -o glm_test_R.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c mla.c -o mla.o
mla.c: In function 'wsum':
mla.c:155: warning: unused variable 'i'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i GGBase_res.rc -o GGBase_res.o
gcc -std=gnu99 -shared -s -o GGBase.dll GGBase.def glm_test.o glm_test_R.o mla.o GGBase_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package GGBase for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: annotate
Loading required package: xtable
Loading required package: graph
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'GGBase'
Formats: text html latex example chm
casting text html latex example chm
gwSnpScreenResult-class text html latex example chm
plot_EvG-methods text html latex example chm
smlSet-class text html latex example chm
snp.rhs.tests154 text html latex example chm
snpLocs.Hs text html latex example chm
snpsNear text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\GGBase.Rcheck\00_pkg_src\GGBase\chm\GGBase.chm
Compile time: 0 minutes, 1 second
8 Topics
80 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\GGBase.Rcheck\00_pkg_src\GGBase\chm\GGBase.chm, 33,083 bytes
Compression decreased file by 26,542 bytes.
adding MD5 sums
* DONE (GGBase)