Package: GEOmetadb

Version: 1.2.1

Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes GEOmetadb_1.2.1.tar.gz

StartedAt: 2009-04-18 16:58:40 -0700 (Sat, 18 Apr 2009)

EndedAt: 2009-04-18 16:59:20 -0700 (Sat, 18 Apr 2009)

EllapsedTime: 39.5 seconds

RetCode: 0

Status: OK

CheckDir: GEOmetadb.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/GEOmetadb.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'GEOmetadb/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GEOmetadb' version '1.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GEOmetadb' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GEOmetadb-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GEOmetadb-manual.tex ... OK
* checking GEOmetadb-manual.tex using pdflatex ... OK

* Installing *source* package 'GEOmetadb' ...
** R
** inst
** preparing package for lazy loading
Loading required package: GEOquery
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RCurl
Loading required package: RSQLite
Loading required package: DBI
** help
 >>> Building/Updating help pages for package 'GEOmetadb'
     Formats: text html latex example 
  GEOmetadb-package                 text    html    latex   example
  columnDescriptions                text    html    latex   example
  geoConvert                        text    html    latex   example
  getSQLiteFile                     text    html    latex   example
** building package indices ...
* DONE (GEOmetadb)