Category 2.8.4
Robert Gentleman
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Category | | Last Changed Rev: 37497 / Revision: 38965 | | Last Changed Date: 2009-02-18 17:43:16 -0800 (Wed, 18 Feb 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/Category.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'Category/DESCRIPTION' ... OK
* this is package 'Category' version '2.8.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Category' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating Category-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Category-manual.tex ... OK
* checking Category-manual.tex using pdflatex ... OK
* Installing *source* package 'Category' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: graph
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
>>> Building/Updating help pages for package 'Category'
Formats: text html latex example
ChrBandTree-class text html latex example
ChrMapHyperGParams-class text html latex example
ChrMapHyperGResult-class text html latex example
ChrMapLinearMParams-class text html latex example
ChrMapLinearMResult-class text html latex example
DatPkg-class text html latex example
GOHyperGParams-class text html latex
HyperGParams-class text html latex
Note: removing empty section \details in file 'HyperGResult-accessors.Rd'
HyperGResult-accessors text html latex example
HyperGResult-class text html latex
HyperGResultBase-class text html latex
KEGGHyperGParams-class text html latex
LinearMParams-class text html latex example
LinearMResult-class text html latex example
LinearMResultBase-class text html latex example
MAPAmat text html latex example
Note: ignoring empty \keyword entries in file 'NewChrBandTree.Rd'
NewChrBandTree text html latex
applyByCategory text html latex example
cateGOryMatrix text html latex example
categoryToEntrezBuilder text html latex
Note: ignoring empty \keyword entries in file 'cb_contingency.Rd'
cb_contingency text html latex
Note: ignoring empty \keyword entries in file 'cb_parse_band_Hs.Rd'
cb_parse_band_Hs text html latex example
Note: ignoring empty \keyword entries in file 'cb_parse_band_Mm.Rd'
cb_parse_band_Mm text html latex example
Note: ignoring empty \keyword entries in file 'cb_test.Rd'
cb_test text html latex
effectSize text html latex
Note: ignoring empty \keyword entries in file 'exampleLevels.Rd'
exampleLevels text html latex
findAMstats text html latex example
geneGoHyperGeoTest text html latex
geneKeggHyperGeoTest text html latex
getPathNames text html latex example
Note: ignoring empty \keyword entries in file 'gseattperm.Rd'
gseattperm text html latex example
hyperGTest text html latex
linearMTest text html latex
Note: removing empty section \examples in file 'local_test_factory.Rd'
local_test_factory text html latex
makeChrBandGraph text html latex example
makeEBcontr text html latex example
makeValidParams text html latex
probes2MAP text html latex example
probes2Path text html latex example
tree_visitor text html latex
ttperm text html latex example
universeBuilder text html latex
** building package indices ...
* DONE (Category)