snpMatrix 1.4.2
David Clayton
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/snpMatrix | | Last Changed Rev: 32197 / Revision: 34573 | | Last Changed Date: 2008-06-08 20:03:07 -0700 (Sun, 08 Jun 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'snpMatrix/DESCRIPTION' ... OK
* preparing 'snpMatrix':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst583212628
---------- Making package snpMatrix ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making adler32.d from adler32.c
making bind.d from bind.c
making compress.d from compress.c
making crc32.d from crc32.c
making deflate.d from deflate.c
making force_hom.d from force_hom.c
making glm_test.d from glm_test.c
making glm_test_R.d from glm_test_R.c
making gzio.d from gzio.c
making hash_index.d from hash_index.c
making ibs.d from ibs.c
making in.d from in.c
making infback.d from infback.c
making inffast.d from inffast.c
making inflate.d from inflate.c
making inftrees.d from inftrees.c
making input.d from input.c
making inputNew.d from inputNew.c
making input_unsorted.d from input_unsorted.c
making ld_graphic_eps.d from ld_graphic_eps.c
making ld_with.d from ld_with.c
making mla.d from mla.c
making outdata.d from outdata.c
making pairwise_linkage.d from pairwise_linkage.c
making read_chiamo.d from read_chiamo.c
making read_hapmap.d from read_hapmap.c
making read_pedfile.d from read_pedfile.c
making read_signals.d from read_signals.c
making readped.d from readped.c
making sdfpw.d from sdfpw.c
making single_snp_tests.d from single_snp_tests.c
making snp_summary.d from snp_summary.c
making snpmpy.d from snpmpy.c
making solve_cubic.d from solve_cubic.c
making solve_quadratic.d from solve_quadratic.c
making structure.d from structure.c
making trees.d from trees.c
making uncompr.d from uncompr.c
making zutil.d from zutil.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c adler32.c -o adler32.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c bind.c -o bind.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c compress.c -o compress.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c crc32.c -o crc32.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c deflate.c -o deflate.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c force_hom.c -o force_hom.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c glm_test.c -o glm_test.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c glm_test_R.c -o glm_test_R.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c gzio.c -o gzio.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c hash_index.c -o hash_index.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c ibs.c -o ibs.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c in.c -o in.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c infback.c -o infback.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c inffast.c -o inffast.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c inflate.c -o inflate.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c inftrees.c -o inftrees.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c input.c -o input.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c inputNew.c -o inputNew.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c input_unsorted.c -o input_unsorted.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c ld_graphic_eps.c -o ld_graphic_eps.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c ld_with.c -o ld_with.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c mla.c -o mla.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c outdata.c -o outdata.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c pairwise_linkage.c -o pairwise_linkage.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c read_chiamo.c -o read_chiamo.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c read_hapmap.c -o read_hapmap.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c read_pedfile.c -o read_pedfile.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c read_signals.c -o read_signals.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c readped.c -o readped.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c sdfpw.c -o sdfpw.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c single_snp_tests.c -o single_snp_tests.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c snp_summary.c -o snp_summary.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c snpmpy.c -o snpmpy.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c solve_cubic.c -o solve_cubic.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c solve_quadratic.c -o solve_quadratic.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c structure.c -o structure.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c trees.c -o trees.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c uncompr.c -o uncompr.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c zutil.c -o zutil.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i snpMatrix_res.rc -o snpMatrix_res.o
gcc -std=gnu99 -shared -s -o snpMatrix.dll snpMatrix.def adler32.o bind.o compress.o crc32.o deflate.o force_hom.o glm_test.o glm_test_R.o gzio.o hash_index.o ibs.o in.o infback.o inffast.o inflate.o inftrees.o input.o inputNew.o input_unsorted.o ld_graphic_eps.o ld_with.o mla.o outdata.o pairwise_linkage.o read_chiamo.o read_hapmap.o read_pedfile.o read_signals.o readped.o sdfpw.o single_snp_tests.o snp_summary.o snpmpy.o solve_cubic.o solve_quadratic.o structure.o trees.o uncompr.o zutil.o snpMatrix_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package snpMatrix for lazy loading
Loading required package: survival
Loading required package: splines
installing man source files
installing indices
not zipping data
installing help
Note: removing empty section \references
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Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \note
Note: removing empty section \note
Note: removing empty section \seealso
Note: removing empty section \seealso
Note: removing empty section \note
Note: removing empty section \examples
Note: removing empty section \note
Note: removing empty section \examples
>>> Building/Updating help pages for package 'snpMatrix'
Formats: text html latex example chm
X.snp-class text html latex example chm
X.snp.matrix-class text html latex example chm
epsout.ld.snp text html latex example chm
for.exercise text html latex example chm
glm.test.control text html latex chm
ibs.stats text html latex example chm
ibsCount text html latex example chm
ibsDist text html latex example chm
ld.snp text html latex example chm
ld.with text html latex example chm
pair.result.ld.snp text html latex example chm
plot.snp.dprime text html latex example chm
qq.chisq text html latex example chm
read.HapMap.data text html latex example chm
read.pedfile.info text html latex chm
read.snps.chiamo text html latex example chm
read.snps.long text html latex chm
read.snps.long.old text html latex chm
read.snps.pedfile text html latex chm
read.wtccc.signals text html latex example chm
row.summary text html latex example chm
single.snp.tests text html latex example chm
snp-class text html latex example chm
snp.cbind text html latex example chm
snp.cor text html latex example chm
snp.dprime-class text html latex example chm
snp.lhs.tests text html latex example chm
snp.matrix-class text html latex example chm
snp.pre text html latex example chm
snp.rhs.tests text html latex example chm
snpMatrix-internal text html latex chm
snpMatrix-package text html latex chm
testdata text html latex example chm
write.snp.matrix text html latex chm
wtccc.sample.list text html latex chm
xxt text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\snpMatrix\chm\snpMatrix.chm
Compile time: 0 minutes, 2 seconds
37 Topics
225 Local links
26 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\snpMatrix\chm\snpMatrix.chm, 95,570 bytes
Compression decreased file by 86,352 bytes.
adding MD5 sums
* DONE (snpMatrix)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'snpMatrix_1.4.2.tar.gz'