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Package 214/260HostnameOS / ArchBUILDCHECKBUILD BIN
rtracklayer 1.0.0
Michael Lawrence
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/rtracklayer
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK [ OK ]
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: rtracklayer
Version: 1.0.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check rtracklayer_1.0.0.tar.gz
StartedAt: 2008-10-16 05:51:47 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 05:52:25 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 38.6 seconds
RetCode: 0
Status: OK
CheckDir: rtracklayer.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/rtracklayer.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'rtracklayer/DESCRIPTION' ... OK
* this is package 'rtracklayer' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rtracklayer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating rtracklayer-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating rtracklayer-manual.tex ... OK
* checking rtracklayer-manual.tex using pdflatex ... OK

rtracklayer.Rcheck/00install.out:

* Installing *source* package 'rtracklayer' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RCurl
** help
 >>> Building/Updating help pages for package 'rtracklayer'
     Formats: text html latex example 
  activeView-methods                text    html    latex   example
  argoSession-class                 text    html    latex
  argoView-class                    text    html    latex
  basicTrackLine-class              text    html    latex
  browseGenome                      text    html    latex   example
  browserSession-class              text    html    latex
  browserSession-methods            text    html    latex
  browserView-class                 text    html    latex
  browserView-methods               text    html    latex   example
  browserViews-methods              text    html    latex   example
  chrid-class                       text    html    latex
  chrid-methods                     text    html    latex   example
  dataVals-methods                  text    html    latex   example
  export                            text    html    latex   example
  export.gff                        text    html    latex   example
  featChrom                         text    html    latex
  genomeBrowsers                    text    html    latex
  genomeSegment-class               text    html    latex
  genomeSegment-methods             text    html    latex   example
  genomeSequence-methods            text    html    latex
  import                            text    html    latex   example
  import.gff                        text    html    latex   example
  laySequence-methods               text    html    latex
  layTrack-methods                  text    html    latex   example
  trackData                         text    html    latex
  trackSet-class                    text    html    latex
  trackSet-methods                  text    html    latex   example
  trackSets-class                   text    html    latex
  trackSets-methods                 text    html    latex
  tracks-methods                    text    html    latex
  ucscSession-class                 text    html    latex
  ucscTable                         text    html    latex
  ucscTrackLine-class               text    html    latex
  ucscTrackModes-class              text    html    latex
  ucscTrackModes-methods            text    html    latex   example
  ucscTrackSet-class                text    html    latex
  ucscView-class                    text    html    latex
  wigTrackLine-class                text    html    latex
** building package indices ...
* DONE (rtracklayer)