gaga 1.0.0
David Rossell
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/gaga | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/gaga.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'gaga/DESCRIPTION' ... OK
* this is package 'gaga' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaga' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating gaga-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gaga-manual.tex ... OK
* checking gaga-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/gaga.Rcheck
---------- Making package gaga ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making cseqdesma.d from cseqdesma.c
making cstat.d from cstat.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c cseqdesma.c -o cseqdesma.o
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2877: warning: 'r0' may be used uninitialized in this function
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c cstat.c -o cstat.o
cstat.c: In function 'nn_integral':
cstat.c:197: warning: unused variable 'detpr'
cstat.c:197: warning: unused variable 'detx'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i gaga_res.rc -o gaga_res.o
gcc -std=gnu99 -shared -s -o gaga.dll gaga.def cseqdesma.o cstat.o gaga_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
>>> Building/Updating help pages for package 'gaga'
Formats: text html latex example chm
checkfit text html latex chm
classpred text html latex example chm
dcgamma text html latex chm
findgenes text html latex example chm
fit.gg text html latex example chm
getpar text html latex chm
parest text html latex example chm
powclasspred text html latex chm
print.gagafit text html latex chm
sim.gg text html latex example chm
simnewsamples text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\gaga.Rcheck\00_pkg_src\gaga\chm\gaga.chm
Compile time: 0 minutes, 0 seconds
12 Topics
47 Local links
11 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\gaga.Rcheck\00_pkg_src\gaga\chm\gaga.chm, 34,339 bytes
Compression decreased file by 22,028 bytes.
adding MD5 sums
* DONE (gaga)