SBMLR 1.34.0
Tomas Radivoyevitch
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/SBMLR | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ ERROR ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | ERROR | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/SBMLR.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'SBMLR/DESCRIPTION' ... OK
* this is package 'SBMLR' version '1.34.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SBMLR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating SBMLR-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'SBMLR-Ex.R' failed.
The error most likely occurred in:
> ### * equateModels
>
> flush(stderr()); flush(stdout())
>
> ### Name: equateModels
> ### Title: Check the equality of the species and reactions of two SBML
> ### models
> ### Aliases: equateModels
> ### Keywords: math
>
> ### ** Examples
>
> library(SBMLR)
> curto1=readSBMLR(file.path(system.file(package="SBMLR"), "models/curto.r"))
Error in UseMethod("xmlName", node) : no applicable method for "xmlName"
Calls: readSBMLR ... append.XMLNode -> addNames -> sapply -> lapply -> FUN
Execution halted
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/SBMLR.Rcheck
---------- Making package SBMLR ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
preparing package SBMLR for lazy loading
Loading required package: XML
Loading required package: odesolve
installing man source files
installing indices
installing help
Note: removing empty section \details
Note: removing empty section \details
>>> Building/Updating help pages for package 'SBMLR'
Formats: text html latex example chm
equateModels text html latex example chm
makeLaw text html latex example chm
readSBML text html latex example chm
readSBMLR text html latex example chm
saveSBML text html latex example chm
saveSBMLR text html latex example chm
simulate text html latex example chm
summary.SBML text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\SBMLR.Rcheck\00_pkg_src\SBMLR\chm\SBMLR.chm
Compile time: 0 minutes, 0 seconds
9 Topics
22 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\SBMLR.Rcheck\00_pkg_src\SBMLR\chm\SBMLR.chm, 25,218 bytes
Compression decreased file by 3,899 bytes.
adding MD5 sums
* DONE (SBMLR)