rama 1.14.0
Raphael Gottardo
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/rama | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/rama.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'rama/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rama' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rama' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating rama-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating rama-manual.tex ... OK
* checking rama-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/rama.Rcheck
---------- Making package rama ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making estimation_slice.d from estimation_slice.c
making ex_estimation_slice.d from ex_estimation_slice.c
making mean.sd.d from mean.sd.c
making reorder.d from reorder.c
making util.d from util.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function 'mcmc_shift':
estimation_slice.c:122: warning: unused variable 'SSeps_sd_new'
estimation_slice.c:121: warning: unused variable 'SSeps_sd'
estimation_slice.c:117: warning: unused variable 'pi'
estimation_slice.c:116: warning: unused variable 'SS12'
estimation_slice.c:116: warning: unused variable 'SSR2'
estimation_slice.c:116: warning: unused variable 'SSR1'
estimation_slice.c:115: warning: unused variable 'dens_epsilon_new'
estimation_slice.c:115: warning: unused variable 'dens_epsilon'
estimation_slice.c:114: warning: unused variable 'l_epsilon_new'
estimation_slice.c:114: warning: unused variable 'l_epsilon'
estimation_slice.c:113: warning: unused variable 'lambda_eps2_new'
estimation_slice.c:113: warning: unused variable 'lambda_eps1_new'
estimation_slice.c: In function 'slice_sampling_lambda_eps':
estimation_slice.c:484: warning: suggest parentheses around comparison in operand of &
estimation_slice.c:493: warning: suggest parentheses around comparison in operand of &
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function 'mcmc':
ex_estimation_slice.c:144: warning: unused variable 'old_a'
ex_estimation_slice.c:143: warning: unused variable 'old_b'
ex_estimation_slice.c:138: warning: unused variable 'sum_res2'
ex_estimation_slice.c:137: warning: unused variable 'sum_res1'
ex_estimation_slice.c:119: warning: unused variable 'dens_t_new'
ex_estimation_slice.c:119: warning: unused variable 'dens_t'
ex_estimation_slice.c:112: warning: unused variable 'pi'
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c mean.sd.c -o mean.sd.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c reorder.c -o reorder.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c util.c -o util.o
util.c: In function 'product_mat_vec':
util.c:574: warning: unused variable 'k'
util.c: In function 'slice_sampling_a':
util.c:629: warning: suggest parentheses around comparison in operand of |
util.c:629: warning: suggest parentheses around comparison in operand of &
util.c:636: warning: suggest parentheses around comparison in operand of &
util.c:643: warning: suggest parentheses around comparison in operand of &
util.c:613: warning: unused variable 'v'
util.c: In function 'slice_sampling_b':
util.c:703: warning: suggest parentheses around comparison in operand of |
util.c:703: warning: suggest parentheses around comparison in operand of &
util.c:710: warning: suggest parentheses around comparison in operand of &
util.c:717: warning: suggest parentheses around comparison in operand of &
util.c:686: warning: unused variable 'v'
util.c: In function 'slice_sampling_b2':
util.c:767: warning: suggest parentheses around comparison in operand of &
util.c:775: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_a2':
util.c:822: warning: suggest parentheses around comparison in operand of &
util.c:830: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_rho':
util.c:876: warning: suggest parentheses around comparison in operand of |
util.c:876: warning: suggest parentheses around comparison in operand of &
util.c:883: warning: suggest parentheses around comparison in operand of &
util.c:890: warning: suggest parentheses around comparison in operand of &
util.c:860: warning: unused variable 'v'
util.c: In function 'slice_sampling_rho2':
util.c:935: warning: suggest parentheses around comparison in operand of &
util.c:944: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_shift':
util.c:1019: warning: suggest parentheses around comparison in operand of |
util.c:1019: warning: suggest parentheses around comparison in operand of &
util.c:1026: warning: suggest parentheses around comparison in operand of &
util.c:1033: warning: suggest parentheses around comparison in operand of &
util.c:1000: warning: unused variable 'v'
util.c: In function 'slice_sampling_shift2':
util.c:1100: warning: suggest parentheses around comparison in operand of &
util.c:1108: warning: suggest parentheses around comparison in operand of &
util.c:1082: warning: unused variable 'v'
util.c: In function 'slice_sampling_p':
util.c:1248: warning: suggest parentheses around comparison in operand of &
util.c:1256: warning: suggest parentheses around comparison in operand of &
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i rama_res.rc -o rama_res.o
gcc -std=gnu99 -shared -s -o rama.dll rama.def estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o rama_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: removing empty section \details
Note: removing empty section \details
>>> Building/Updating help pages for package 'rama'
Formats: text html latex example chm
arrange.row text html latex example chm
est.shift text html latex example chm
fit.model text html latex example chm
hiv text html latex chm
is.row.na text html latex example chm
ls.effect text html latex example chm
mat.mean text html latex example chm
ratio.plot text html latex example chm
weight.plot text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\rama.Rcheck\00_pkg_src\rama\chm\rama.chm
Compile time: 0 minutes, 0 seconds
10 Topics
18 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\rama.Rcheck\00_pkg_src\rama\chm\rama.chm, 28,449 bytes
Compression decreased file by 9,636 bytes.
adding MD5 sums
* DONE (rama)