GraphAlignment 1.2.0
Joern P. Meier
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GraphAlignment | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'GraphAlignment/DESCRIPTION' ... OK
* preparing 'GraphAlignment':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst246050607
---------- Making package GraphAlignment ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making GA_alloc.d from GA_alloc.c
making GA_matrix.d from GA_matrix.c
making GA_matrix_R.d from GA_matrix_R.c
making GA_message.d from GA_message.c
making GA_vector.d from GA_vector.c
making GA_vector_R.d from GA_vector_R.c
making GraphAlignment.d from GraphAlignment.c
making lap.d from lap.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_alloc.c -o GA_alloc.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_matrix.c -o GA_matrix.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_matrix_R.c -o GA_matrix_R.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_message.c -o GA_message.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_vector.c -o GA_vector.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GA_vector_R.c -o GA_vector_R.o
GA_vector_R.c: In function 'GA_clamp_mode_from_R':
GA_vector_R.c:139: warning: unused variable 'size'
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c GraphAlignment.c -o GraphAlignment.o
GraphAlignment.c: In function 'GA_encode_directed_graph':
GraphAlignment.c:138: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c:159: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c: In function 'GA_directed_mode_from_R':
GraphAlignment.c:264: warning: unused variable 'size'
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c lap.c -o lap.o
lap.c: In function 'LAP_lap':
lap.c:65: warning: 'min' may be used uninitialized in this function
lap.c:64: warning: 'last' may be used uninitialized in this function
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i GraphAlignment_res.rc -o GraphAlignment_res.o
gcc -std=gnu99 -shared -s -o GraphAlignment.dll GraphAlignment.def GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o GraphAlignment_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'GraphAlignment'
Formats: text html latex example chm
AlignNetworks text html latex example chm
AlignedPairs text html latex example chm
AnalyzeAlignment text html latex example chm
ComputeLinkParameters text html latex example chm
ComputeM text html latex example chm
ComputeNodeParameters text html latex example chm
ComputeScores text html latex example chm
CreateScoreMatrix text html latex example chm
EncodeDirectedGraph text html latex example chm
GenerateExample text html latex example chm
GetBinNumber text html latex example chm
InitialAlignment text html latex example chm
InvertPermutation text html latex example chm
LinearAssignment text html latex example chm
MatrixToBin text html latex example chm
Permute text html latex example chm
Trace text html latex example chm
VectorToBin text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\GraphAlignment\chm\GraphAlignment.chm
Compile time: 0 minutes, 0 seconds
19 Topics
75 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\GraphAlignment\chm\GraphAlignment.chm, 32,307 bytes
Compression decreased file by 26,297 bytes.
adding MD5 sums
* DONE (GraphAlignment)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GraphAlignment_1.2.0.tar.gz'