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Package 91/260HostnameOS / ArchBUILDCHECKBUILD BIN
GeneSelector 1.0.1
Martin Slawski
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/GeneSelector
Last Changed Rev: 32234 / Revision: 34573
Last Changed Date: 2008-06-10 17:19:03 -0700 (Tue, 10 Jun 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: GeneSelector
Version: 1.0.1
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check GeneSelector_1.0.1.tar.gz
StartedAt: 2008-10-16 05:52:22 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 05:55:48 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 206.0 seconds
RetCode: 0
Status: OK
CheckDir: GeneSelector.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/GeneSelector.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'GeneSelector/DESCRIPTION' ... OK
* this is package 'GeneSelector' version '1.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneSelector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GeneSelector-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GeneSelector-manual.tex ... OK
* checking GeneSelector-manual.tex using pdflatex ... OK

GeneSelector.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GeneSelector.Rcheck


---------- Making package GeneSelector ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package GeneSelector for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "toplist": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
  Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "toplist": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
  Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "GenerateBootMatrix": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
  Arguments of method and generic are not in the same order
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'GeneSelector'
     Formats: text html latex example chm 
  AdjustPvalues                     text    html    latex   example chm
  AggregateBayes-methods            text    html    latex           chm
  AggregateBayes                    text    html    latex   example chm
  AggregatePCA-methods              text    html    latex           chm
  AggregatePCA                      text    html    latex           chm
  AggregatePenalty-methods          text    html    latex           chm
  AggregatePenalty                  text    html    latex           chm
  AggregateSimple-methods           text    html    latex           chm
  AggregateSimple                   text    html    latex   example chm
  AggregatedRanking-class           text    html    latex           chm
  BootMatrix-class                  text    html    latex           chm
  CombinedRanking-class             text    html    latex           chm
  FoldMatrix-class                  text    html    latex           chm
  GeneRanking-class                 text    html    latex           chm
  GeneSelector-methods              text    html    latex           chm
  GeneSelector-package              text    html    latex           chm
  GeneSelector                      text    html    latex   example chm
  GenerateBootMatrix-methods        text    html    latex           chm
  GenerateBootMatrix                text    html    latex   example chm
  GenerateFoldMatrix-methods        text    html    latex           chm
  GenerateFoldMatrix                text    html    latex   example chm
  GetAlpha                          text    html    latex   example chm
  GetRepeatRanking-methods          text    html    latex           chm
  GetRepeatRanking                  text    html    latex   example chm
  GetStabilityGLM-methods           text    html    latex           chm
  GetStabilityGLM                   text    html    latex           chm
  GetStabilityLm-methods            text    html    latex           chm
  GetStabilityLm                    text    html    latex   example chm
  GetStabilityOverlap-methods       text    html    latex           chm
  GetStabilityOverlap               text    html    latex   example chm
  GetStabilityPCA-methods           text    html    latex           chm
  GetStabilityPCA                   text    html    latex           chm
  HeatmapMethods-methods            text    html    latex           chm
  HeatmapMethods                    text    html    latex   example chm
  PCAMethods-methods                text    html    latex           chm
  PCAMethods                        text    html    latex           chm
  PCAMethodsResult-class            text    html    latex           chm
  RankingBaldiLong-methods          text    html    latex           chm
  RankingBaldiLong                  text    html    latex   example chm
  RankingBstat-methods              text    html    latex           chm
  RankingBstat                      text    html    latex   example chm
  RankingEbam-methods               text    html    latex           chm
  RankingEbam                       text    html    latex   example chm
  RankingFC-methods                 text    html    latex           chm
  RankingFC                         text    html    latex   example chm
  RankingFoxDimmic-methods          text    html    latex           chm
  RankingFoxDimmic                  text    html    latex   example chm
  RankingGap-methods                text    html    latex           chm
  RankingGap                        text    html    latex   example chm
  RankingLimma-methods              text    html    latex           chm
  RankingLimma                      text    html    latex   example chm
  RankingPermutation-methods        text    html    latex           chm
  RankingPermutation                text    html    latex   example chm
  RankingSam-methods                text    html    latex           chm
  RankingSam                        text    html    latex   example chm
  RankingShrinkageT-methods         text    html    latex           chm
  RankingShrinkageT                 text    html    latex   example chm
  RankingSoftthresholdT-methods     text    html    latex           chm
  RankingSoftthresholdT             text    html    latex   example chm
  RankingTstat-methods              text    html    latex           chm
  RankingTstat                      text    html    latex   example chm
  RankingWelchT-methods             text    html    latex           chm
  RankingWelchT                     text    html    latex   example chm
  RankingWilcEbam-methods           text    html    latex           chm
  RankingWilcEbam                   text    html    latex   example chm
  RankingWilcoxon-methods           text    html    latex           chm
  RankingWilcoxon                   text    html    latex   example chm
  RecoveryScore                     text    html    latex   example chm
  RepeatRanking-class               text    html    latex           chm
  StabilityGLM-class                text    html    latex           chm
  StabilityLm-class                 text    html    latex           chm
  StabilityOverlap-class            text    html    latex           chm
  StabilityPCA-class                text    html    latex           chm
  internals                         text    html    latex           chm
  join-methods                      text    html    latex           chm
  join                              text    html    latex           chm
  plot,AggregatedRanking            text    html    latex           chm
  plot,CombinedRanking              text    html    latex           chm
  plot,RepeatRanking                text    html    latex           chm
  plot,StabilityLm                  text    html    latex           chm
  plot,StabilityOverlap             text    html    latex           chm
  samplingcontrol                   text    html    latex           chm
  summary,GeneRanking               text    html    latex           chm
  summary,StabilityOverlap          text    html    latex           chm
  toplist-methods                   text    html    latex           chm
  toydata                           text    html    latex   example chm
  variance,RepeatRanking            text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\GeneSelector.Rcheck\00_pkg_src\GeneSelector\chm\GeneSelector.chm


Compile time: 0 minutes, 0 seconds
88	Topics
799	Local links
53	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\GeneSelector.Rcheck\00_pkg_src\GeneSelector\chm\GeneSelector.chm, 96,411 bytes
Compression decreased file by 221,365 bytes.
  adding MD5 sums

* DONE (GeneSelector)