rsbml 1.5.1
Michael Lawrence
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rsbml | | Last Changed Rev: 30883 / Revision: 30951 | | Last Changed Date: 2008-04-07 09:57:56 -0700 (Mon, 07 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.1) / i386 | ERROR | skipped | skipped |
* checking for file 'rsbml/DESCRIPTION' ... OK
* preparing 'rsbml':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst168472964
---------- Making package rsbml ------------
adding build stamp to DESCRIPTION
making DLL ...
making StringMap.d from StringMap.c
making check.d from check.c
making doc.d from doc.c
making dom.d from dom.c
making graph.d from graph.c
making init.d from init.c
making io.d from io.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c StringMap.c -o StringMap.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/common.h:87,
from StringMap.c:52:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c check.c -o check.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from check.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c doc.c -o doc.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from doc.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c dom.c -o dom.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from dom.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
dom.c: In function 'rsbml_build_dom_s_base':
dom.c:138: warning: implicit declaration of function 'SBase_getElementName'
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c graph.c -o graph.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from graph.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c init.c -o init.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from init.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c io.c -o io.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from io.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i rsbml_res.rc -o rsbml_res.o
gcc -std=gnu99 -shared -s -o rsbml.dll rsbml.def StringMap.o check.o doc.o dom.o graph.o init.o io.o rsbml_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -LC:/SBML/libsbml-2.3.4-expat/win32/bin -lsbml -lR
StringMap.o: In function `StringMapItem_create':
e:\biocbld\bbs-2.2-bioc\meat\rsbml\src/StringMap.c:101: undefined reference to `safe_malloc'
StringMap.o: In function `StringMap_create':
e:\biocbld\bbs-2.2-bioc\meat\rsbml\src/StringMap.c:83: undefined reference to `safe_malloc'
e:\biocbld\bbs-2.2-bioc\meat\rsbml\src/StringMap.c:84: undefined reference to `safe_calloc'
StringMap.o: In function `StringMap_grow':
e:\biocbld\bbs-2.2-bioc\meat\rsbml\src/StringMap.c:281: undefined reference to `safe_calloc'
StringMap.o: In function `StringMapItem_create':
e:\biocbld\bbs-2.2-bioc\meat\rsbml\src/StringMap.c:101: undefined reference to `safe_malloc'
e:\biocbld\bbs-2.2-bioc\meat\rsbml\src/StringMap.c:101: undefined reference to `safe_malloc'
dom.o: In function `rsbml_build_dom_s_base':
e:\biocbld\bbs-2.2-bioc\meat\rsbml\src/dom.c:138: undefined reference to `SBase_getElementName'
collect2: ld returned 1 exit status
make[3]: *** [rsbml.dll] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-rsbml] Error 2
*** Installation of rsbml failed ***
Removing 'E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst168472964/rsbml'
* creating vignettes ... ERROR
Error: processing vignette 'quick-start.Rnw' failed with diagnostics:
chunk 1 (label=read)
Error in library(rsbml) : there is no package called 'rsbml'
Execution halted