prada 1.15.1
Florian Hahne
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/prada | | Last Changed Rev: 30701 / Revision: 30951 | | Last Changed Date: 2008-03-26 21:17:40 -0700 (Wed, 26 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ WARNINGS ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/prada.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'prada/DESCRIPTION' ... OK
* this is package 'prada' version '1.15.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'prada' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gatePoints: no visible binding for global variable 'prev'
killProgress: no visible binding for global variable
'.tkprogress.canceled'
killProgress: no visible binding for global variable
'.tkprogress.window'
progress: no visible binding for global variable '.tkprogress.window'
progress: no visible binding for '<<-' assignment to
'.tkprogress.labelText'
progress: no visible binding for global variable
'.tkprogress.labelText'
progress: no visible binding for global variable '.tkprogress.iterator'
progress: no visible binding for global variable
'.tkprogress.fallbackIterator'
progress : <anonymous>: no visible binding for '<<-' assignment to
'.tkprogress.canceled'
updateProgress: no visible binding for '<<-' assignment to
'.tkprogress.iterator'
updateProgress: no visible binding for global variable
'.tkprogress.iterator'
updateProgress: no visible binding for '<<-' assignment to
'.tkprogress.fallbackIterator'
updateProgress: no visible binding for global variable
'.tkprogress.fallbackIterator'
updateProgress: no visible binding for '<<-' assignment to
'.tkprogress.labelText'
updateProgress: no visible binding for global variable
'.tkprogress.labelText'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic 'split' and siglist 'cytoSet'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating prada-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating prada-manual.tex ... OK
* checking prada-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
/loc/home/biocbuild/bbs-2.2-bioc/meat/prada.Rcheck/00check.log
for details
* Installing *source* package 'prada' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o prada.so inPolygon.o -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-05)
Attaching package: 'rrcov'
The following object(s) are masked from package:stats :
biplot,
predict,
screeplot
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "split" in "prada"
** help
Note: ignoring empty \keyword entries
Note: removing empty section \details
Note: removing empty section \seealso
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: removing empty section \examples
Note: ignoring empty \keyword entries
Note: removing empty section \seealso
Note: removing empty section \seealso
Note: ignoring empty \keyword entries
Note: removing empty section \seealso
Note: ignoring empty \keyword entries
>>> Building/Updating help pages for package 'prada'
Formats: text html latex example
analysePlate text html latex example
as.all text html latex example
barploterrbar text html latex example
combineFrames text html latex example
csApply text html latex example
cytoFrame-class text html latex example
cytoSet-class text html latex example
data-cytoFrame text html latex example
data-cytoSet text html latex example
devDims text html latex example
devRes text html latex example
fitNorm2 text html latex example
gate-class text html latex example
gateSet-class text html latex example
getPradaPar text html latex example
new-internal text html latex
plotNorm2 text html latex example
plotPlate text html latex example
readCytoSet text html latex example
readFCS text html latex example
readFCSaux text html latex
removeCensored text html latex example
tcltkProgress text html latex example
threePanelPlot text html latex example
thresholds text html latex example
touchFCS text html latex
vpLocation text html latex example
** building package indices ...
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: methods
* DONE (prada)