hexbin 1.13.3
Nicholas Lewin-Koh
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/hexbin | | Last Changed Rev: 30573 / Revision: 30951 | | Last Changed Date: 2008-03-18 15:55:01 -0700 (Tue, 18 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ WARNINGS ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/hexbin.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.13.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
all.intersect: no visible binding for global variable 'binlst'
grid.hexagons: no visible binding for global variable 'bin'
hexplom.formula: no visible global function definition for 'updateList'
inout.hex: no visible global function definition for 'exit'
mixcolors: no visible global function definition for 'coords'
panel.hexpose: no visible binding for global variable 'h'
* checking Rd files ... WARNING
Rd files without 'description':
getHMedian.Rd
These entries are required in an Rd file.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating hexbin-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/loc/home/biocbuild/bbs-2.2-bioc/meat/hexbin.Rcheck/tests'
Running 'hdiffplot.R'
Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...3a4,11
>
> Attaching package: 'colorspace'
>
>
> The following object(s) are masked from package:grDevices :
>
> hcl
>
8,9c16
< In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage") :
< Buggy version of Kinderman-Ramage generator used.
---
> Buggy version of Kinderman-Ramage generator used. in: RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage")
59c66
< ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE ...
---
> ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE ...
104c111
< ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE ...
---
> ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE ...
135d141
< + plot.new()
OK
Running 'hray.R'
Running 'large.R'
Running 'viewp-ex.R'
make[1]: Leaving directory `/loc/home/biocbuild/bbs-2.2-bioc/meat/hexbin.Rcheck/tests'
OK
* checking package vignettes in 'inst/doc' ... OK
* creating hexbin-manual.tex ... OK
* checking hexbin-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
/loc/home/biocbuild/bbs-2.2-bioc/meat/hexbin.Rcheck/00check.log
for details
* Installing *source* package 'hexbin' ...
** libs
gfortran -fpic -g -O2 -Wall -c hbin.f -o hbin.o
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gfortran -fpic -g -O2 -Wall -c hcell.f -o hcell.o
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gfortran -fpic -g -O2 -Wall -c herode.f -o herode.o
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herode.f:37.26:
integer n, bdim(2) ! number of cells and 2-D array bounds
1
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herode.f:38.24:
integer erode(1) ! erosion status
1
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herode.f:39.15:
integer ncell(1),ncnt(1) ! extracted id's and expanded counts
1
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herode.f:40.24:
integer sides(1) ! number of exposed sides
1
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herode.f:41.25:
integer neib(6,*) ! pointers to the neighbors
1
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herode.f:42.26:
logical exist(0:*) ! cell existence
1
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herode.f:45.15:
integer inc1(6), inc2(6) ! increments to get neighbors
1
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herode.f:111.32:
if (c .eq. 1) then
1
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gfortran -fpic -g -O2 -Wall -c hsm.f -o hsm.o
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gcc -std=gnu99 -shared -L/usr/local/lib64 -o hexbin.so hbin.o hcell.o herode.o hsm.o -lgfortran -lm -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: grid
Loading required package: lattice
Creating a new generic function for "plot" in "hexbin"
Creating a new generic function for "summary" in "hexbin"
** help
Note: removing empty section \references
Note: removing empty section \description
Note: removing empty section \examples
Note: removing empty section \seealso
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \examples
>>> Building/Updating help pages for package 'hexbin'
Formats: text html latex example
NHANES text html latex example
colramp text html latex example
erode.hexbin text html latex example
getHMedian text html latex
gplot.hexbin text html latex example
grid.hexagons text html latex example
grid.hexlegend text html latex example
hboxplot text html latex example
hcell2xy text html latex example
hcell2xyInt text html latex example
hdiffplot text html latex example
hexGraphPaper text html latex example
hexList text html latex
hexMA.loess text html latex example
hexTapply text html latex example
hexVP-class text html latex example
hexVP.abline text html latex
hexViewport text html latex example
hexbin text html latex example
hexbinplot text html latex example
hexplom text html latex example
hexpolygon text html latex example
hsmooth-methods text html latex
inout.hex text html latex
list2hexList text html latex
old-classes text html latex
optShape text html latex example
panel.hexboxplot text html latex example
panel.hexgrid text html latex
panel.hexloess text html latex
plotMAhex text html latex example
pushHexport text html latex
smooth.hexbin text html latex example
** building package indices ...
* DONE (hexbin)