gaga 0.0.1
David Rossell
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gaga | | Last Changed Rev: 30639 / Revision: 30951 | | Last Changed Date: 2008-03-24 10:46:05 -0700 (Mon, 24 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ WARNINGS ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/gaga.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'gaga/DESCRIPTION' ... OK
* this is package 'gaga' version '0.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaga' can be installed ... WARNING
Found the following significant warnings:
cseqdesma.c:1233: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'nobsxpred' is used uninitialized in this function
cstat.c:1124: warning: 'indx' is used uninitialized in this function
See '/loc/home/biocbuild/bbs-2.2-bioc/meat/gaga.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating gaga-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gaga-manual.tex ... OK
* checking gaga-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
/loc/home/biocbuild/bbs-2.2-bioc/meat/gaga.Rcheck/00check.log
for details
* Installing *source* package 'gaga' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c cseqdesma.c -o cseqdesma.o
cseqdesma.c: In function 'fit_ggC':
cseqdesma.c:1019: warning: unused variable 'malpha0'
cseqdesma.c: In function 'expected_fp':
cseqdesma.c:1667: warning: unused variable 'eps'
cseqdesma.c:1667: warning: unused variable 'err'
cseqdesma.c:1665: warning: unused variable 'interval'
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: unused variable 'zero'
cseqdesma.c:2869: warning: unused variable 'one'
cseqdesma.c:2869: warning: unused variable 'nobs'
cseqdesma.c:2869: warning: unused variable 'prodpat'
cseqdesma.c:2869: warning: unused variable 'sumpat'
cseqdesma.c:2869: warning: unused variable 'nx'
cseqdesma.c:2869: warning: unused variable 'px'
cseqdesma.c:2869: warning: unused variable 'sx'
cseqdesma.c:2867: warning: unused variable 'group'
cseqdesma.c:4199:1: warning: "/*" within comment
cseqdesma.c:4243:1: warning: "/*" within comment
cseqdesma.c:4295:1: warning: "/*" within comment
cseqdesma.c:4341:1: warning: "/*" within comment
cseqdesma.c: In function 'sampleclas_ggC':
cseqdesma.c:1233: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:1233: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpred_ggC':
cseqdesma.c:3621: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3621: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simpar_ggC':
cseqdesma.c:3435: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3435: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'simnewsamples_ggC':
cseqdesma.c:3241: warning: 'sumxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'prodxpred' is used uninitialized in this function
cseqdesma.c:3241: warning: 'nobsxpred' is used uninitialized in this function
cseqdesma.c: In function 'pp_ggC':
cseqdesma.c:2869: warning: 'r0' may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c cstat.c -o cstat.o
cstat.c: In function 'ludc':
cstat.c:1017: warning: 'imax' may be used uninitialized in this function
cstat.c: In function 'lu_det':
cstat.c:1124: warning: 'indx' is used uninitialized in this function
gcc -std=gnu99 -shared -L/usr/local/lib64 -o gaga.so cseqdesma.o cstat.o -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** inst
** help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
>>> Building/Updating help pages for package 'gaga'
Formats: text html latex example
checkfit text html latex
classpred text html latex example
dcgamma text html latex
findgenes text html latex example
fit.gg text html latex example
getpar text html latex
parest text html latex example
powclasspred text html latex
print.gagafit text html latex
sim.gg text html latex example
simnewsamples text html latex
** building package indices ...
* DONE (gaga)