fbat 1.3.0
Weiliang Qiu
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/fbat | | Last Changed Rev: 27716 / Revision: 30951 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | [ OK ] | OK | OK |
* checking for file 'fbat/DESCRIPTION' ... OK
* preparing 'fbat':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'fbat' ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c FBAT.c -o FBAT.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -march=nocona -Wall -c missGFreq.f -o missGFreq.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -march=nocona -Wall -c register.c -o register.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fbat.so FBAT.o missGFreq.o register.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c FBAT.c -o FBAT.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c missGFreq.f -o missGFreq.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c register.c -o register.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fbat.so FBAT.o missGFreq.o register.o -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.1 -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c FBAT.c -o FBAT.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c missGFreq.f -o missGFreq.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c register.c -o register.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fbat.so FBAT.o missGFreq.o register.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: MASS
Loading required package: GeneticsBase
Loading required package: combinat
Attaching package: 'combinat'
The following object(s) are masked from package:utils :
combn
Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
** help
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \examples
Note: removing empty section \seealso
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \seealso
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \seealso
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \examples
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \value
>>> Building/Updating help pages for package 'fbat'
Formats: text html latex example
checkMarkers text html latex example
checkMendelian text html latex example
fbat text html latex example
getFounders text html latex
missGFreq text html latex example
pedAFreq text html latex example
pedFlagHomo text html latex example
pedGFreq text html latex example
pedHardyWeinberg text html latex example
readHapMap text html latex
readLink text html latex
readPed text html latex
sampleInfoCEU text html latex example
sampleInfoCHB text html latex example
sampleInfoJPT text html latex example
sampleInfoYRI text html latex example
summaryPvalue text html latex example
viewFlagHomo text html latex example
viewHW text html latex example
viewstat text html latex example
** building package indices ...
* DONE (fbat)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'fbat_1.3.0.tar.gz'