SAGElyzer 1.17.0
Jianhua Zhang
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SAGElyzer | | Last Changed Rev: 27716 / Revision: 30951 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/SAGElyzer.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'SAGElyzer/DESCRIPTION' ... OK
* this is package 'SAGElyzer' version '1.17.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SAGElyzer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
RODBC Rdbi RdbiPgSQL
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getBinding: no visible global function definition for 'PgSQL'
query4Unix: no visible global function definition for 'dbGetResult'
querySAGE: no visible global function definition for 'PgSQL'
tableExists: no visible global function definition for
'odbcTableExists'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating SAGElyzer-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating SAGElyzer-manual.tex ... OK
* checking SAGElyzer-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.2-bioc/meat/SAGElyzer.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/SAGElyzer.Rcheck
---------- Making package SAGElyzer ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing exec files
installing inst files
installing data files
preparing package SAGElyzer for lazy loading
Loading required package: AnnBuilder
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: XML
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Attaching package: 'widgetTools'
The following object(s) are masked from package:xtable :
label
Loading required package: DynDoc
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'SAGElyzer'
Formats: text html latex example chm
SAGELyzer text html latex example chm
SAGEMapper text html latex example chm
SAGEToolTips text html latex example chm
SAGEWidget text html latex example chm
con4Win text html latex example chm
getGEOSAGE text html latex example chm
getNormFactor text html latex example chm
getTargetRow text html latex example chm
mergeSAGE text html latex example chm
mergeSAGEWidget text html latex example chm
querySAGE text html latex example chm
support text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\SAGElyzer.Rcheck\00_pkg_src\SAGElyzer\chm\SAGElyzer.chm
Compile time: 0 minutes, 0 seconds
13 Topics
144 Local links
5 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\SAGElyzer.Rcheck\00_pkg_src\SAGElyzer\chm\SAGElyzer.chm, 38,292 bytes
Compression decreased file by 35,562 bytes.
adding MD5 sums
* DONE (SAGElyzer)